| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,615,785 – 20,615,904 |
| Length | 119 |
| Max. P | 0.665140 |
| Location | 20,615,785 – 20,615,904 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 71.00 |
| Mean single sequence MFE | -26.81 |
| Consensus MFE | -1.36 |
| Energy contribution | -1.44 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.05 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.665140 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20615785 119 + 22407834 AAUCUACACAGUCAAGACAGUCAAAAACUGACGGAAAUUCGAGGAGUUUUCUUUAUUCUCUUUGUUCGUAAGGUUAAGCGAAAAAGCCUCGUGAUCCAAUUUUAUUUGUGCA-UGACUGU .......(((((((.((((((((.....))))(((....(((((..(((((((((....(((((....))))).)))).)))))..)))))...))).........))).).-))))))) ( -32.80) >DroSec_CAF1 134716 111 + 1 AAUCUGCAGAGCCAAGA-------AAAUUGAGGAAAAUUCAAGGUGUUCUCUUUAUUCUCUUGGU-GUUGAGGUUAACCGAAAGAGCCUUGUUAUCCAAUCAAAGUAAUGCA-UAUUUUA ....((((..(((((((-------.(((.((((((.((.....)).))).))).))).)))))))-...((((((...(....)))))))..................))))-....... ( -23.20) >DroSim_CAF1 130749 111 + 1 AAUCUGCAGAGUCAAGA-------AAAUUGAGGAAAAUUCGAGGUGUUCUCUUAAGGCUCUUCGU-GUUGAGGUUAAGCGAAAGAGCGUCCUUAAACAGUCAAAGUAAUGCA-UAGUUUC ....((((.......((-------...(((((((......(((.....))).....(((((((((-...........))).)))))).)))))))....)).......))))-....... ( -23.54) >DroEre_CAF1 119658 109 + 1 AAUAUGC--AGUCAAGA-------AAAGCGACGGAAAUUCAAAGUGUUCACUUUGUUCUCUUUCU-GUUGCGGUUAAAGGAAAA-ACCACUUGAUACAUUUAAAUAAAAAUGCUAGCUUA .....((--.((((((.-------...((((((((((..((((((....)))))).....)))))-)))))((((........)-))).)))))).(((((......)))))...))... ( -30.60) >DroYak_CAF1 124243 109 + 1 AAUCUGCACAGUCAAGA-------AAAUUGACGGAAAUUCGAAGGGUUCUCUUUAUUCCCUUUCU-GUGAUGG-UAAGGGAAAA-GCCGUUUAAUCCAAUCAAAUUAAGGCG-UAGUUUA ...((((.(.(((((..-------...)))))(((.....(((((....))))).(((((((.((-.....))-.)))))))..-.........)))............).)-))).... ( -23.90) >consensus AAUCUGCACAGUCAAGA_______AAAUUGACGGAAAUUCGAGGUGUUCUCUUUAUUCUCUUUGU_GUUGAGGUUAAGCGAAAAAGCCUCGUGAUCCAAUCAAAUUAAUGCA_UAGUUUA .....................................(((((((......)))).....(((((....)))))......)))...................................... ( -1.36 = -1.44 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:34 2006