Locus 7425

Sequence ID 2L_DroMel_CAF1
Location 20,615,313 – 20,615,433
Length 120
Max. P 0.997382
window11936

overview

Window 6

Location 20,615,313 – 20,615,433
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 94.89
Mean single sequence MFE -25.25
Consensus MFE -24.53
Energy contribution -23.82
Covariance contribution -0.72
Combinations/Pair 1.23
Mean z-score -1.65
Structure conservation index 0.97
SVM decision value 2.85
SVM RNA-class probability 0.997382
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20615313 120 + 22407834
UGGCAGCGACAAUGCGCCGCAAUUACGAAAAUAGUUGAAAACUGUGCGAACGACAACGGAAAAAACAGGAACAUAACCAACCGAGAAUACCGGUUAAAGCACAGUAAAUAUUUUCCACCA
..((.(((......))).))......(((((((.......(((((((....................((.......))(((((.......)))))...)))))))...)))))))..... ( -26.90)
>DroSec_CAF1 134259 120 + 1
UGGCAGCGACAAUGCGCCGCAAUUACGAAAAUAGUUGAAAACUGUGCGAACGACAACGGAAAAAACAGGAACAUAACCAACCGAGAAUACCGGUUAAAGCACAGUAAAUAUUUUCCACCA
..((.(((......))).))......(((((((.......(((((((....................((.......))(((((.......)))))...)))))))...)))))))..... ( -26.90)
>DroSim_CAF1 130294 120 + 1
UGGCAGCGACAAUGCGCCGCAAUUACGAAAAUAGUUGAAAACUGUGCGAACGACAACGGAAAAAACAGGAACAUAACCAACCGAGAAUACCGGUUAAAGCACAGUAAAUAUUUUCCAGCA
..((.(((......))).))......(((((((.......(((((((....................((.......))(((((.......)))))...)))))))...)))))))..... ( -26.90)
>DroEre_CAF1 119255 120 + 1
UGGCAGCGACAAUGCGCCGCAAUUACGAAAAUAGUUGAAAACUGUGCGAGCGACAACGGAAAAAACAGGAACAUAACCAACCGAGAAUACCGGUUAAAGCACUGUAAAUAUUUUCCGCCA
.(((........(((((((((..........((((.....)))))))).))).))..((((((.((((.....(((((.............))))).....)))).....))))))))). ( -27.12)
>DroYak_CAF1 123771 120 + 1
UGGCAGCGACAAUGCGCCGCAAUUACGAAAAUAGUUGAAAACUGUGCGAGCGACAACGGAAAAAACAGGAACAUAACCAACCGAGAAUACCGGUUAAAGCAUAGUAAAUAUUUUCCACCG
..((.(((......))).))......(((((((.......(((((((....................((.......))(((((.......)))))...)))))))...)))))))..... ( -25.00)
>DroAna_CAF1 128981 120 + 1
UGGCAGCGACAAUGUGCAGCAAUUACGAAAAUAGUUGAAAACUAUGGUAGCGACAACGGAAAAAACAGGAACAUAACCAACCGAAAAUAACGGUAAAACUAUAGUAAAUAUUUUUCACCA
..((.(((......))).))......(((((..(((....((((((((...................((.......)).((((.......))))...)))))))).)))..))))).... ( -18.70)
>consensus
UGGCAGCGACAAUGCGCCGCAAUUACGAAAAUAGUUGAAAACUGUGCGAACGACAACGGAAAAAACAGGAACAUAACCAACCGAGAAUACCGGUUAAAGCACAGUAAAUAUUUUCCACCA
..((.(((......))).))......(((((((.......(((((((....................((.......))(((((.......)))))...)))))))...)))))))..... (-24.53 = -23.82 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:33 2006