Locus 7422

Sequence ID 2L_DroMel_CAF1
Location 20,606,131 – 20,606,250
Length 119
Max. P 0.706189
window11928 window11929

overview

Window 8

Location 20,606,131 – 20,606,235
Length 104
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 82.51
Mean single sequence MFE -35.03
Consensus MFE -23.09
Energy contribution -22.90
Covariance contribution -0.19
Combinations/Pair 1.21
Mean z-score -2.18
Structure conservation index 0.66
SVM decision value 0.36
SVM RNA-class probability 0.706189
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20606131 104 + 22407834
G--------------UUGGGAAUCCGGAAUCGUUGGCAACAUGAUGGUGCACACUUUGCAUUUUGGCCACGAAUAAAAAGUGUGUGUGGCCGGCCGCAAAUU-UAUACGAUGCCAAAAG
.--------------..((....))((.(((((((((........((((((.....)))))).((((((((.(((.....))).))))))))))))......-...))))).))..... ( -29.20)
>DroSec_CAF1 125283 104 + 1
G--------------UUGCGAAUCCGGAAUCGUUGGCAACAUGAUGGCACACACUUUGCAUUUUGGCCACGAAUAAAAAGUGUGUGCGGCCGGCCGCAAAUU-UAUACGAUGCCAAAAG
.--------------(((((...((((.(((((.(....)))))).(((((((((((....((((....))))...)))))))))))..)))).)))))...-................ ( -36.70)
>DroSim_CAF1 121267 104 + 1
G--------------UUGCGAAUCCGGAAUCGUUGGCAACAUGAUGGCGCACACUUUGCAUUUUGGCCACGAAUAAAAAGUGUGUGCGGCCGGCCGGAAAUU-UAUACGAUGCCAAAAG
.--------------.......(((((.(((((.(....)))))).(((((((((((....((((....))))...)))))))))))......)))))....-................ ( -32.70)
>DroEre_CAF1 111444 117 + 1
GAGCGGAGAUCGGAAUCCGGAAUCCGGAAUCGUUGGCAACAUGAUGGCGCACACUUUGCAUU-UGGCCACGAAUAAAAAGUGUGUGCGGCAGGCCGCAAAUU-UAUACGCUGGCCAGAG
..(((((..((((...))))..)))...(((((.(....)))))).(((((((((((..(((-((....)))))..))))))))))).)).((((((.....-.....)).)))).... ( -44.30)
>DroYak_CAF1 114953 104 + 1
G--------------UUCGGAAAUCGAAAUCGUUGGCAGCAUGAUGGCGCGCACUUUGCAUUUUGGCCACGAAUAAAAAGUGUGUGCGGCAGGCCGCAAAUU-UAUAGAAUGGCCAGAG
.--------------((((.....))))....(((((.((......))(((((((((....((((....))))...)))))))))((((....)))).....-.........))))).. ( -30.50)
>DroAna_CAF1 118297 101 + 1
G--------------GUG----GCCGAAAUCGUUGGCAACAUGAUGGCGCACAUUUUACAUUUUGGCCAAGAAUGAAAAGUGUGUGCGGCCCGCCGCAAAUAACAUUUAAUGGGAUAAA
(--------------(((----(((...(((((.(....)))))).(((((((((((.((((((.....)))))).))))))))))))).)))))........................ ( -36.80)
>consensus
G______________UUGGGAAUCCGGAAUCGUUGGCAACAUGAUGGCGCACACUUUGCAUUUUGGCCACGAAUAAAAAGUGUGUGCGGCCGGCCGCAAAUU_UAUACGAUGCCAAAAG
.........................(..(((((.(....))))))..)(((((((((....((((....))))...)))))))))((((....))))...................... (-23.09 = -22.90 +  -0.19)

alignment

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secondary structure

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dotplot

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Window 9

Location 20,606,156 – 20,606,250
Length 94
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 84.79
Mean single sequence MFE -29.89
Consensus MFE -21.27
Energy contribution -21.38
Covariance contribution 0.11
Combinations/Pair 1.24
Mean z-score -2.52
Structure conservation index 0.71
SVM decision value 0.18
SVM RNA-class probability 0.619637
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20606156 94 + 22407834
CAUGAUGGUGCACACUUUGCAUUUUGGCCACGAAUAAAAAGUGUGUGUGGCCGGCCGCAAAUU-UAUACGAUGCCAAAAGUGUGCAAUUCCCAAA
.....(((((((((((((.......(((((((.(((.....))).)))))))(((((......-....))..))).))))))))))....))).. ( -31.50)
>DroSec_CAF1 125308 94 + 1
CAUGAUGGCACACACUUUGCAUUUUGGCCACGAAUAAAAAGUGUGUGCGGCCGGCCGCAAAUU-UAUACGAUGCCAAAAGUGUGCAAUUCCCCAA
(((..(((((((((((((....((((....))))...))))))))(((((....)))))....-.......)))))...)))............. ( -28.30)
>DroSim_CAF1 121292 94 + 1
CAUGAUGGCGCACACUUUGCAUUUUGGCCACGAAUAAAAAGUGUGUGCGGCCGGCCGGAAAUU-UAUACGAUGCCAAAAGUGUGCAAUUCCCCCC
.......(((((((((((....((((....))))...)))))))))))((....))((((.(.-(((((..........))))).).)))).... ( -27.30)
>DroEre_CAF1 111483 92 + 1
CAUGAUGGCGCACACUUUGCAUU-UGGCCACGAAUAAAAAGUGUGUGCGGCAGGCCGCAAAUU-UAUACGCUGGCCAGAGUGUGCAAUACUCAA-
..((.(.(((((((((((..(((-((....)))))..))))))))))).)))((((((.....-.....)).)))).((((((...))))))..- ( -35.70)
>DroYak_CAF1 114978 93 + 1
CAUGAUGGCGCGCACUUUGCAUUUUGGCCACGAAUAAAAAGUGUGUGCGGCAGGCCGCAAAUU-UAUAGAAUGGCCAGAGUGUGCAAUUCUUAA-
...((..((((((.....))((((((((((........((((...(((((....))))).)))-)......))))))))))))))...))....- ( -30.74)
>DroAna_CAF1 118318 95 + 1
CAUGAUGGCGCACAUUUUACAUUUUGGCCAAGAAUGAAAAGUGUGUGCGGCCCGCCGCAAAUAACAUUUAAUGGGAUAAAUUCGCAGUACUUAUU
...(((((((((((((((.((((((.....)))))).)))))))))))((....))........))))...((.((.....)).))......... ( -25.80)
>consensus
CAUGAUGGCGCACACUUUGCAUUUUGGCCACGAAUAAAAAGUGUGUGCGGCCGGCCGCAAAUU_UAUACGAUGCCAAAAGUGUGCAAUUCCCAA_
.........((((((((((((((((............))))))).(((((....))))).................))))))))).......... (-21.27 = -21.38 +   0.11)

alignment

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secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:27 2006