| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,603,374 – 20,603,469 |
| Length | 95 |
| Max. P | 0.934434 |
| Location | 20,603,374 – 20,603,469 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 80.25 |
| Mean single sequence MFE | -22.02 |
| Consensus MFE | -14.92 |
| Energy contribution | -14.57 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.44 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.68 |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.934434 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20603374 95 + 22407834 AAUAGUGGGUAAUGUUCUA--CAGGGAUAAAAUAAAAUUUAUUGUGUGGUCCAAAUGCCGCACUCUCUCUCUCUCUGUCUUUUUUCCCUAUGCAAAU ....(((((.((......(--((((((...((((.....))))(((((((......)))))))........))))))).....)).)))))...... ( -20.60) >DroSec_CAF1 122620 87 + 1 AAUAGUGGGUAAUGUUCUA--UAGGGAUAAAAUGAAAUUUAUUGUGUGGUCCAAAUGCCGCACUCUCUU--------UCUUUUUCCCCUAUGCAAAU .................((--(((((..((((.((((......(((((((......)))))))....))--------))))))..)))))))..... ( -21.50) >DroSim_CAF1 118579 87 + 1 AAUAGUGGGUAAUGUUCUA--CAGGGAUAAAAUGAAAUUUAUUGUGUGGUCCAAAUGCCGCACUCUCUU--------UCUUUUUCCCCUAUGCAAAU ....(((((......))))--)((((..((((.((((......(((((((......)))))))....))--------))))))..))))........ ( -22.90) >DroEre_CAF1 108956 89 + 1 AAUAGUGGGUAAUGUCCUA--C-GGGAUAAAAUGAAAUUUAUUGUGUGGUCCACAUGCCGCACUCUCUCAUUU----UCCUU-UUCCCCAUGCAAAU ....(((((...(((((..--.-.)))))((((((........(((((((......)))))))....))))))----.....-...)))))...... ( -25.50) >DroYak_CAF1 112234 91 + 1 AAUAGUGGGUAAUGUUUUG--CAGGGAUAAAAUAAAAUUUAUUGUGUGGUCCAAAUGCCGCACUCUCUUAAUU----UCUUUUUUCCCUAUGCAAAU ...............((((--((((((.((((..(((((....(((((((......)))))))......))))----)..))))))))..)))))). ( -23.60) >DroAna_CAF1 116019 88 + 1 AAUAGUGGGAAACAUUUUUAUUUCGGCUUAAAUGAAAUUUAUUGUUUGGUUCAUGUACUACCCACUAGCUC------UCCCCU---UCUAUGCAAAU ..((((((((((((.....((((((.......))))))....)))))(((......))).)))))))((..------......---.....)).... ( -18.02) >consensus AAUAGUGGGUAAUGUUCUA__CAGGGAUAAAAUGAAAUUUAUUGUGUGGUCCAAAUGCCGCACUCUCUC________UCUUUUUUCCCUAUGCAAAU ....(((((...((((((.....))))))..............(((((((......))))))).......................)))))...... (-14.92 = -14.57 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:17 2006