Locus 7418

Sequence ID 2L_DroMel_CAF1
Location 20,600,938 – 20,601,032
Length 94
Max. P 0.820182
window11919

overview

Window 9

Location 20,600,938 – 20,601,032
Length 94
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 91.13
Mean single sequence MFE -20.20
Consensus MFE -17.78
Energy contribution -18.70
Covariance contribution 0.92
Combinations/Pair 1.10
Mean z-score -1.63
Structure conservation index 0.88
SVM decision value 0.68
SVM RNA-class probability 0.820182
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20600938 94 + 22407834
---------CCCGUCCACUCAGCUUUAAUUUGCCUGUCAUUUCGCAUAUCCUGCGAGGGCUAAGCUGACAUUUGGACCCGUCAACUGCCACUCCCAC--CUUUCU
---------...(((((.(((((((......((((......(((((.....))))))))).)))))))....)))))....................--...... ( -23.80)
>DroSec_CAF1 120208 94 + 1
---------CCCGUCUACUCAGCUUUAAUUUGCCUGUCAUUUCGCAUAUCCUGCAAGGGCUAAGCUGACAUUUGGACCCGUCAACUGCCACUCCCAC--CUUUCU
---------...(((((.(((((((......(((((......)(((.....)))..)))).)))))))....)))))....................--...... ( -17.80)
>DroSim_CAF1 116150 94 + 1
---------CCCGUCCACUCAGCUUUAAUUUGCCUGUCAUUUCGCAUAUCCUGCGAGGGCUAAGCUGACAUUUGGACCCGUCAACUGCCACUCCCAC--CUUUCU
---------...(((((.(((((((......((((......(((((.....))))))))).)))))))....)))))....................--...... ( -23.80)
>DroEre_CAF1 106482 94 + 1
---------CCCGUCCACUCAGCUUUAAUUUGCCUGUCAUUUCGCAUAUCCUGCGAGGGCUUAGCUGACAUUUGAGCCCGUCAACUGCCACUCCCAC--CUUUCU
---------............((........)).((.(...(((((.....)))))((((((((.......))))))))).))..............--...... ( -18.10)
>DroYak_CAF1 109715 94 + 1
---------CCCGUCCACUCAACUUUAAUUUGCCUGUCAUUUCACAUAUCCUGCGAGGGCUUAGCUGACAUUUGGACCCGUCAACUGCCACUCCCAU--CUUCCU
---------..........................................((.((((((..((.((((..........)))).))))).))).)).--...... ( -11.90)
>DroAna_CAF1 113396 105 + 1
GGCUGCCAACCCGUCCACUCAGCUUUAAUUUGCCUGUCAUUUCGCAUUGCCUGCGAGGGCUAAGCUGACAUUUGGCCCCGUCAACUGCCACUCCCACUGCCACCU
(((...............(((((((......((((......(((((.....))))))))).)))))))....((((..........))))........))).... ( -25.80)
>consensus
_________CCCGUCCACUCAGCUUUAAUUUGCCUGUCAUUUCGCAUAUCCUGCGAGGGCUAAGCUGACAUUUGGACCCGUCAACUGCCACUCCCAC__CUUUCU
............(((((.(((((((......((((......(((((.....))))))))).)))))))....)))))............................ (-17.78 = -18.70 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:16 2006