| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,599,765 – 20,599,899 |
| Length | 134 |
| Max. P | 0.936094 |
| Location | 20,599,765 – 20,599,859 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 85.12 |
| Mean single sequence MFE | -26.13 |
| Consensus MFE | -20.60 |
| Energy contribution | -22.18 |
| Covariance contribution | 1.59 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.79 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.532374 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20599765 94 - 22407834 AAAUUAUACGCACAUGGCUGGGGGAAAUCGAGCUGGGAUAGCUUGUCCCGUGUGCUUAACCGGAAAUCGUGUGCAAAAUGAAAAUUCGGGAGGU--- .........((((((((((.((.....)).))))(((((.....)))))))))))....(((((..((((.......))))...))))).....--- ( -28.70) >DroPse_CAF1 166547 85 - 1 AAAUUAUACGCCU------------AAUCGAGUGGGGAAAUCUGCUCCCAUGUGCUAGCCCGGAAAUGGAGUCAACAAACAACAAAUGGCAGGGCCU .........((((------------......((((((........)))))).(((((..(((....))).((......))......))))))))).. ( -18.20) >DroSec_CAF1 119136 94 - 1 AAAUUAUACGCACAUGGCUGGGGGAAAUCGAGCUGGGAUAGCUUGUCCCAUGUGCUUAACCGGAAAUCGUGUGCAAAAUGAAAAUUCGGGAGGA--- .........((((((((((.((.....)).))))(((((.....)))))))))))....(((((..((((.......))))...))))).....--- ( -28.40) >DroSim_CAF1 114987 94 - 1 AAAUUAUACGCACAUGGCUGGGGGAAAUCGAGCUGGGAUAGCUUGUCCCAUGUGCUUAACCGGAAAUCGUGUGCAAAAUGAAAAUUCGGGAGGA--- .........((((((((((.((.....)).))))(((((.....)))))))))))....(((((..((((.......))))...))))).....--- ( -28.40) >DroEre_CAF1 104072 94 - 1 AAAUUAUACGCACAUGGCUGGGGGAAAUCGAGCUGGGAUAGCUUGUCCCAUGUGCUUAACCGGAAAUCGUGUGCAAAAUGAAAAUUCGGGAGGA--- .........((((((((((.((.....)).))))(((((.....)))))))))))....(((((..((((.......))))...))))).....--- ( -28.40) >DroYak_CAF1 108579 94 - 1 AAAUUAUACGCAUAUGGCUGGGGGAAAUCAAGCUGGGAUAGCUUGUCCCAUGUGCUUAACCGGAAAUCGUGUGCAAAAUGAAAAUUCGGGAGGA--- .........((((((((((((((((...(((((((...))))))))))).((....)).))))...))))))))..........(((....)))--- ( -24.70) >consensus AAAUUAUACGCACAUGGCUGGGGGAAAUCGAGCUGGGAUAGCUUGUCCCAUGUGCUUAACCGGAAAUCGUGUGCAAAAUGAAAAUUCGGGAGGA___ .........((((((((((.((.....)).))))(((((.....)))))))))))....(((((..((((.......))))...)))))........ (-20.60 = -22.18 + 1.59)
| Location | 20,599,802 – 20,599,899 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 96.08 |
| Mean single sequence MFE | -20.32 |
| Consensus MFE | -18.86 |
| Energy contribution | -19.06 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.93 |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.936094 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20599802 97 + 22407834 AAGCACACGGGACAAGCUAUCCCAGCUCGAUUUCCCCCAGCCAUGUGCGUAUAAUUUAUGUUGCAAUUUAUAUAUGUGCUCCUCGAUUUCCCCCUUU .((((((.(((((.((((.....)))).)...))))...((.....(((((.....))))).))..........))))))................. ( -18.50) >DroSec_CAF1 119173 97 + 1 AAGCACAUGGGACAAGCUAUCCCAGCUCGAUUUCCCCCAGCCAUGUGCGUAUAAUUUAUGUUGCAAUUUAUAUAUGUGCUCCUCGAUUUCCCCCUUU .((((((((((((.((((.....)))).)...))))...((.....(((((.....))))).)).........)))))))................. ( -19.40) >DroSim_CAF1 115024 97 + 1 AAGCACAUGGGACAAGCUAUCCCAGCUCGAUUUCCCCCAGCCAUGUGCGUAUAAUUUAUGUUGCAAUUUAUAUAUGUGCUCCUCGAUUUCCCCCUUU .((((((((((((.((((.....)))).)...))))...((.....(((((.....))))).)).........)))))))................. ( -19.40) >DroEre_CAF1 104109 97 + 1 AAGCACAUGGGACAAGCUAUCCCAGCUCGAUUUCCCCCAGCCAUGUGCGUAUAAUUUAUGUUGCAAUUUAUAUAUGUGCUCCUCGAUUUCGGCUUUU ((((...(((((.......)))))...(((..((....(((((((((((((.....)))))..........))))).)))....))..))))))).. ( -20.80) >DroYak_CAF1 108616 97 + 1 AAGCACAUGGGACAAGCUAUCCCAGCUUGAUUUCCCCCAGCCAUAUGCGUAUAAUUUAUGUUGCAAUUUAUAUAUGUGCUCCUCGAUAUUCCAUUUU .(((((((((((((((((.....))))))...))))...((.....(((((.....))))).)).........)))))))................. ( -23.50) >consensus AAGCACAUGGGACAAGCUAUCCCAGCUCGAUUUCCCCCAGCCAUGUGCGUAUAAUUUAUGUUGCAAUUUAUAUAUGUGCUCCUCGAUUUCCCCCUUU .((((((((((((.((((.....)))).)...))))...((.....(((((.....))))).)).........)))))))................. (-18.86 = -19.06 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:15 2006