Locus 7416

Sequence ID 2L_DroMel_CAF1
Location 20,598,905 – 20,599,022
Length 117
Max. P 0.835301
window11916

overview

Window 6

Location 20,598,905 – 20,599,022
Length 117
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 86.23
Mean single sequence MFE -31.02
Consensus MFE -21.66
Energy contribution -23.97
Covariance contribution 2.31
Combinations/Pair 1.04
Mean z-score -2.13
Structure conservation index 0.70
SVM decision value 0.73
SVM RNA-class probability 0.835301
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20598905 117 - 22407834
ACGAUAUUAACGAAGGAAGUCGGUACACGUAGAAGUGUCGAAAAGGCAAUUUUCCAUGUGGACGUUUCCAUCGAUUUGGCCUGUCUGUCACUAGUUUCCUUCGACUACUCAUUGCAU
..........(((((((((..(((.(((((.(((.((((.....))))...))).)))))((((...(((......)))..))))....)))..))))))))).............. ( -32.60)
>DroSec_CAF1 118352 113 - 1
AAAAUAUUAACGAAGGAAGUCAGUACACGUUGAAGUGUCGAAAAGGCAAUUUUCCAGGUGGACAUUUCCAUCGAUUUGGCCU----GUCACUAGUUUCCUUCGACUACUCAUUGCAU
..........(((((((((..((((((.((..((.((((.....))))........((((((....))))))..))..)).)----)).)))..))))))))).............. ( -34.00)
>DroSim_CAF1 114172 113 - 1
ACAAUAUUAACGAAGGAAGUCAGUACACGUUGAAGUGUCGAAAAGGCAAUUUUCCAGGUGGACAUUUCCAUCGAUUUGGCCU----GUCACUAGUUUCCUUCGACUACUCAUUGCAU
..........(((((((((..((((((.((..((.((((.....))))........((((((....))))))..))..)).)----)).)))..))))))))).............. ( -34.00)
>DroYak_CAF1 107752 102 - 1
ACCAUAUUAACGCAGGAAGUUA-----------GUAGUCCAAAAGGCAAUUUUCCAGGUGGACGUUUCCAUCGAUUUGCGCU----GUAACUAGUUUCCUUCGACUACCCAUUGCAU
..........((.(((((..((-----------(((((.((((.((.......)).((((((....))))))..)))).)))----...))))..))))).)).............. ( -23.50)
>consensus
ACAAUAUUAACGAAGGAAGUCAGUACACGUUGAAGUGUCGAAAAGGCAAUUUUCCAGGUGGACAUUUCCAUCGAUUUGGCCU____GUCACUAGUUUCCUUCGACUACUCAUUGCAU
..........(((((((((..(((((((......)))).....((((.....((..((((((....))))))))....)))).......)))..))))))))).............. (-21.66 = -23.97 +   2.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:14 2006