Locus 7415

Sequence ID	2L_DroMel_CAF1
Location	20,598,363 – 20,598,454
Length	91
Max. P	0.878828

overview

Window 5

Location	20,598,363 – 20,598,454
Length	91
Sequences	5
Columns	92
Reading direction	forward
Mean pairwise identity	72.79
Mean single sequence MFE	-15.94
Consensus MFE	-5.34
Energy contribution	-5.54
Covariance contribution	0.20
Combinations/Pair	1.20
Mean z-score	-1.95
Structure conservation index	0.34
SVM decision value	0.91
SVM RNA-class probability	0.878828
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20598363 91 + 22407834
UUAUUAGCAUUUCUAAACUUUGCAAAAAGUCCCAAAAAUCACUUUACUAUCUGUGCUUCCCGCAUUUCGUGGCCUUAUCACGCAGAACUC-G
......(((...........)))..(((((..........)))))....((((((....((((.....))))........))))))....-. ( -11.60)
>DroSec_CAF1 117797 90 + 1
UUAUUAGCACUUCUAAACUUUGGAAAA--UGCCAAAAUUUCCUUUCCUAUCUAAGCUCCCCGAGUUCCGUGGCUAUAUCACGCAGAACUCCC
......(((.(((((.....)))))..--))).............................(((((((((((.....)))))..)))))).. ( -14.80)
>DroSim_CAF1 113614 89 + 1
UUAUUAGCACUUCUAAACUUUGGAAAA--UGCCAAAAUUCACUUUACUAUCUAAGCUCCCCGAGUUCCGUGGCUAUAUCACGCAGAACUC-C
......(((.(((((.....)))))..--))).............................(((((((((((.....)))))..))))))-. ( -14.80)
>DroEre_CAF1 102867 76 + 1
AUACUAUCCUUUCGGAUCUGUAGAAUG--UGCCAAAA--CAC--UACUAUCUGUGCA---------CCGUGGCUAUGCCACGCACAAUUC-C
.(((.((((....))))..)))(((((--(((.....--(((--........)))..---------..(((((...))))))))).))))-. ( -21.40)
>DroYak_CAF1 107246 80 + 1
UUACUAACCAUUCUAAACUUUGGAAAG--UGCCGAAAAUCACUUUUCCAUCUGUGCA---------CCGUGGCUAUCCCACGCACAAUUC-C
....................(((((((--((........))).))))))..(((((.---------..((((.....)))))))))....-. ( -17.10)
>consensus
UUAUUAGCACUUCUAAACUUUGGAAAA__UGCCAAAAAUCACUUUACUAUCUGUGCU_CCCG__UUCCGUGGCUAUAUCACGCAGAACUC_C
..................(((((........)))))...............................(((((.....))))).......... ( -5.34 =  -5.54 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:13 2006