Locus 7414

Sequence ID 2L_DroMel_CAF1
Location 20,598,116 – 20,598,214
Length 98
Max. P 0.649572
window11914

overview

Window 4

Location 20,598,116 – 20,598,214
Length 98
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 75.33
Mean single sequence MFE -27.66
Consensus MFE -8.92
Energy contribution -9.84
Covariance contribution 0.92
Combinations/Pair 1.19
Mean z-score -1.80
Structure conservation index 0.32
SVM decision value 0.24
SVM RNA-class probability 0.649572
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20598116 98 + 22407834
ACCCCGAUGAGCACAGAAUCCCACCACCUCAACCCAAAAAGCCACCCAGUGCAACCACAGUGGUGC---GGGUGGUGGUGCUUUGAGCCCAUCCAGACUUA
.....((((.((.((((....(((((((...((((.....(((((...(((....))).)))))..---))))))))))).)))).)).))))........ ( -33.20)
>DroSec_CAF1 117567 95 + 1
ACCCCGAUGAGCACAGAAUCCCACCAACUCCACCCGAAAGGCAACCCAGUGCAACCACAGUGGUGC---GAGUAGUGGCGCUUUAAGCUCAUCCAUCC---
.....(((((((...(((.(((((..(((((((((....)(((......))).........)))).---)))).)))).).)))..))))))).....--- ( -30.20)
>DroSim_CAF1 113384 95 + 1
ACCCCGAUGAGCACAGAAUCCCACCCACUCAACCCAAAAGGCCUCCCAGUGCAACCACAGUGGUGC---GAGUGGUGGCGCUUAAAGCUCAUCCAUUC---
.....(((((((....((.((((((.((((.........((....))...(((.((.....)))))---))))))))).).))...))))))).....--- ( -30.30)
>DroEre_CAF1 102677 79 + 1
ACCCCGAUGAGCACGGAGCCCG-CCCACUC-GCCCA--AAUCCACCCAGUGCAACCACAGUGGUGCAUCGAGAUGUGGC--UCUU----------------
..............((((((.(-(...(((-(....--...((((...(((....))).)))).....))))..)))))--))).---------------- ( -19.20)
>DroYak_CAF1 106953 96 + 1
ACCCCAAUGAGCACAGAAUCCAACCGACGCAGCCCA--AAGCCACCCAGUGCAACCACAGUGGUGU---GGGUGGUGGUGCUUUCAACCCAUCCAGACUCG
........((((((....((.....))(((.(((((--..(((((...(((....))).))))).)---)))).))))))))).................. ( -25.40)
>consensus
ACCCCGAUGAGCACAGAAUCCCACCAACUCAACCCAAAAAGCCACCCAGUGCAACCACAGUGGUGC___GAGUGGUGGCGCUUUAAGCCCAUCCAGAC___
........((((...(........)...............((((((....(((.((.....))))).......)))))))))).................. ( -8.92 =  -9.84 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:12 2006