Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,596,751 – 20,596,843 |
Length | 92 |
Max. P | 0.829029 |
Location | 20,596,751 – 20,596,843 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 82.78 |
Mean single sequence MFE | -19.40 |
Consensus MFE | -13.36 |
Energy contribution | -13.20 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.07 |
Mean z-score | -2.04 |
Structure conservation index | 0.69 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829029 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20596751 92 - 22407834 UACAUAUGAACAUAUGUAUAUACAUAUGUGGGUGGUCGAGUCAACACUUGACAGCCAAACGAUAAUUUUCUUAACUAAAUUGUCCAGGCAGG ..(((....((((((((....))))))))..)))(((((((....))))))).(((....((((((((........))))))))..)))... ( -27.30) >DroSec_CAF1 116213 74 - 1 U------------------AUACAUAUGUGGGUGGCCGAGUCAACACUUGACAGCCAAACGAUAAUUUUCUUAACUAAAUUGUCCAGGCAGG .------------------.......((((..((((...((((.....)))).))))..)((((((((........))))))))...))).. ( -16.40) >DroSim_CAF1 112025 74 - 1 U------------------AUACAUAUGUGGGUGGCCGAGUCAACACUUGACAGCCAAACGAUAAUUUUCUUAACUAAAUUGUCCAGGCAGG .------------------.......((((..((((...((((.....)))).))))..)((((((((........))))))))...))).. ( -16.40) >DroEre_CAF1 101417 71 - 1 UACAUAC--------------ACGUAU----GUGGCCGAGUCAACACUUGACAGCCAAACGAUAAUUU--CUAACUAAAUUGUCCAGGCAG- ((((((.--------------...)))----)))(((..((((.....))))........((((((((--......))))))))..)))..- ( -17.20) >DroYak_CAF1 105594 80 - 1 UACAUAC------------UUACAUAUGUGGGUGGCCAAGUCAACACUUGACAGUCAAACGAUAAUUUUCUUAACUAAAUUGUCCAGGCAGG ....(((------------((((....)))))))(((..((((.....))))........((((((((........))))))))..)))... ( -19.70) >consensus UACAUA_____________AUACAUAUGUGGGUGGCCGAGUCAACACUUGACAGCCAAACGAUAAUUUUCUUAACUAAAUUGUCCAGGCAGG ..................................(((..((((.....))))........((((((((........))))))))..)))... (-13.36 = -13.20 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:11 2006