Locus 7410

Sequence ID 2L_DroMel_CAF1
Location 20,590,235 – 20,590,327
Length 92
Max. P 0.766508
window11906

overview

Window 6

Location 20,590,235 – 20,590,327
Length 92
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 75.77
Mean single sequence MFE -22.34
Consensus MFE -12.29
Energy contribution -12.98
Covariance contribution 0.69
Combinations/Pair 1.15
Mean z-score -2.01
Structure conservation index 0.55
SVM decision value 0.52
SVM RNA-class probability 0.766508
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20590235 92 - 22407834
GAAAAGAAUGGGGC-----AUACAUAAGUCAAAGCUCCAUUCGUUUUACAUACGCUACAAUAUAUUGUUG-----------CACAGGAGGAGCACAUUUACGUAAGAU
.....(((((((((-----..............)))))))))(((((((....((.((((....)))).)-----------)......(.....)......))))))) ( -21.14)
>DroSec_CAF1 109822 84 - 1
GAAAAGAAUGGGGG-----AUACAUAAGUCGAAGCCCCAUUCAUUUUGCAUACGCUACAAUAUAUUUUUG-------------------GAGCACAUUUAUGUAAGAU
.....(((((((((-----((......)))....))))))))((((((((((.(((.(((.......)))-------------------.))).....)))))))))) ( -23.20)
>DroSim_CAF1 105527 84 - 1
GAAAAGACUGGGGG-----AUACAUAAGUCGAAGCCCCAUUCCUUUUGCAUACGCUACAAUAUAUUUUUG-------------------GAGCUCAUUUAUGUAAGAU
.....((.((((((-----((......)))....))))).)).(((((((((.(((.(((.......)))-------------------.))).....))))))))). ( -17.90)
>DroYak_CAF1 99019 104 - 1
AAAAAGAAUGGGGGCAUGCACACAUAAGUCAAAGCCC-UCUCUUUUCACAUACGCAAAAAUACAUUUUGGGCCUCUGAGUUCACAG---GAGCACAUUUAUGUGAGAU
..(((((..((((((.((.((......))))..))))-)))))))(((((((..(((((.....))))).((..(((......)))---..)).....)))))))... ( -27.10)
>consensus
GAAAAGAAUGGGGG_____AUACAUAAGUCAAAGCCCCAUUCAUUUUACAUACGCUACAAUAUAUUUUUG___________________GAGCACAUUUAUGUAAGAU
.....((((((((.....................)))))))).(((((((((.(((..................................))).....))))))))). (-12.29 = -12.98 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:05 2006