Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,128,800 – 2,128,920 |
Length | 120 |
Max. P | 0.706255 |
Location | 2,128,800 – 2,128,920 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.42 |
Mean single sequence MFE | -40.26 |
Consensus MFE | -30.08 |
Energy contribution | -31.44 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.09 |
Mean z-score | -1.81 |
Structure conservation index | 0.75 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.706255 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2128800 120 - 22407834 GGAACAACCAAGUAUGAUCUGGUGGUGCGAGCUGGCGAAUGGGAUACCUCGACUACGGCUGACCAGCAGCACGUGGAUCUCGAGGUGCUGAAUAUAGUCUCCCAUGAACAGUUCAACAGA .(.((.((((.(......))))).)).)((((((....((((((.((((((((((((((((.....)))).)))))...)))))))((((....)))).))))))...))))))...... ( -43.60) >DroSec_CAF1 129054 120 - 1 GAAACAAUCGAAGAUGAUCUGUUGGUGCGAGCUGGCGAAUGGGAUACCUCGACUACGGCUGACCAGCAGCACGUGGAUCUCGAGGUGCUGAAUAUAGUCUCCCACGAACAGUUCAACAGA ............(.(((.(((((.(((.((((((...(.(.((.(((((((((((((((((.....)))).)))))...)))))))))).).).))).))).))).))))).))).)... ( -43.80) >DroSim_CAF1 128186 120 - 1 GAAACAAUCGCAGAUGAUCUGCUGGUGCGAGCUGGCGAAUGGGAUACCUCGACUACGGCUGACCAGCAGCACGUGGAUCUCGAGGUGCUGAAUAUAGUCUCCCACGAACAGUUCAACAGA ......(((((((.....)))).)))..((((((.....(((((.((((((((((((((((.....)))).)))))...)))))))((((....)))).)))))....))))))...... ( -43.60) >DroEre_CAF1 131734 120 - 1 GACACCGCCGAAAAUGAUCUGGUGGUGCGAGCUGGCGAAUGGGAUAUUUCGACUACGAGUGACCAGCAGCAUGUGGAUCUCGAGGUCCUGAAAAUAGUCUACCAUGAGCAGUUCAACAGA (.(((((((((......)).))))))))((((((.(..(((((((.((((((((.((((...(((........)))..)))).))))..))))...)))..))))..)))))))...... ( -39.00) >DroYak_CAF1 134233 120 - 1 GAUACUACUGAAGAUGAUCUGCUGGUGCGAGCUGGCGAAUGGGAUACUUCGACUACGAAUGACCGGAAGCAUGUGGAUCUCGAGGUUCUGAAAAUAAUCUCCCAUGAACAGUUCAACAGA .......(((..........((....))((((((....((((((.(((((((((((..(((..(....))))))))...)))))))...((......))))))))...))))))..))). ( -31.30) >consensus GAAACAACCGAAGAUGAUCUGCUGGUGCGAGCUGGCGAAUGGGAUACCUCGACUACGGCUGACCAGCAGCACGUGGAUCUCGAGGUGCUGAAUAUAGUCUCCCAUGAACAGUUCAACAGA ........................((..((((((....(((((((((((((((((((((((.....)))).)))))...))))))))..((......))))))))...)))))).))... (-30.08 = -31.44 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:31 2006