| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,588,214 – 20,588,304 |
| Length | 90 |
| Max. P | 0.756703 |
| Location | 20,588,214 – 20,588,304 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.93 |
| Mean single sequence MFE | -29.90 |
| Consensus MFE | -16.31 |
| Energy contribution | -17.12 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.756703 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20588214 90 - 22407834 GAAUUUUG----UAUGCAUGUGCAUGCGCCGGGCUCUUCAUAAAAGGUGUUGAAUUCAAUGCCUGCUUUGAAUUACAGACGGC--------CUCCGU------GAAGA------------ .......(----(((((....))))))((((..((.((((....((((((((....))))))))....))))....)).))))--------......------.....------------ ( -27.20) >DroPse_CAF1 151547 98 - 1 CG-UGCUGGAUAUAUGUAGGGGCAGG---ACGGCUCUUCAUAAAAGGUGUUGAAUUCAAUGCCUGCUUUGAAUUACAGACAUGCCAGGGAGCCCAGU------ACAGG------------ .(-((((((...((((.((((((...---...))))))))))..((((((((....))))))))(((((......((....))....))))))))))------))...------------ ( -31.50) >DroSec_CAF1 107756 90 - 1 GAAUUUUG----UAUGCAUGUGCAUGCGCCGGGCUCUUCAUAAAAGGUGUUGAAUUCAAUGCCUGCUUUGAAUUACAGACGGC--------CUCCGU------GGAGA------------ .......(----(((((....))))))((((..((.((((....((((((((....))))))))....))))....)).))))--------(((...------.))).------------ ( -30.40) >DroEre_CAF1 93461 90 - 1 GAAUUUUG----UAUGCAUGUGCAUGCGCCGGGCUCUUCAUAAAAGGUGUUGAAUUCAAUGCCUGCUUUGAAUUACAGACGGC--------CUCCGU------GAAGA------------ .......(----(((((....))))))((((..((.((((....((((((((....))))))))....))))....)).))))--------......------.....------------ ( -27.20) >DroYak_CAF1 96989 90 - 1 GAAUUUUG----UAUGCAUGUGCAUGCGCUGGGCUCUUCAUAAAAGGUGUUGAAUUCAAUGCCUGCUUUGAAUUACAGACGGC--------CUCCGU------AAAGA------------ .......(----(((((....)))))).(((.....((((....((((((((....))))))))....))))...)))((((.--------..))))------.....------------ ( -25.40) >DroAna_CAF1 96170 108 - 1 GGAUUUCG----UAUGCAUGUGCAUGCGCCGGGCUCUUCAUAAAAGGUGUUAAAUUCAGUGCCUGCCUUGAAUUACAGGCUGC--------AUCCUUUUUGGCCAAGAAGGAUGCAUACA .......(----(((((....))))))(((.(....((((....(((..((......))..)))....))))...).)))(((--------(((((((((....)))))))))))).... ( -37.70) >consensus GAAUUUUG____UAUGCAUGUGCAUGCGCCGGGCUCUUCAUAAAAGGUGUUGAAUUCAAUGCCUGCUUUGAAUUACAGACGGC________CUCCGU______GAAGA____________ ............(((((....))))).((((.(...((((....(((..(((....)))..)))....))))...)...))))..................................... (-16.31 = -17.12 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:04 2006