Locus 7407

Sequence ID 2L_DroMel_CAF1
Location 20,582,657 – 20,582,772
Length 115
Max. P 0.589473
window11902

overview

Window 2

Location 20,582,657 – 20,582,772
Length 115
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 81.20
Mean single sequence MFE -35.18
Consensus MFE -23.48
Energy contribution -24.23
Covariance contribution 0.75
Combinations/Pair 1.20
Mean z-score -1.49
Structure conservation index 0.67
SVM decision value 0.11
SVM RNA-class probability 0.589473
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20582657 115 + 22407834
AAGACGUUUUGAUUAUUUAGGAUGCGUCCCAGUUUGGCUUUUGAGCCCUGAACUCUCG----AAGUGGGGCCACUAUAUAGUGGAAACAGCUCGGGCCAUUCUGGGCACGUUCAUAAAC
....((((((((....))))))))((((((((..(((((..((((((((..(((....----.))).)))(((((....))))).....))))))))))..))))).)))......... ( -40.10)
>DroSec_CAF1 97345 113 + 1
AAGCCGUUCCGAUUAUUUAGGAUGCGUCCCAGUUUGGCUUUUGAGCCCUGAACUCUCG----AAGUGG-GCCACUAUAUAGUGGAAACAGCUCG-GCCAUUCUGGGCACGUUCAUAAAC
...................(((((.(.(((((..(((((...(((((((..(((....----.)))))-)(((((....))))).....)))))-))))..)))))).)))))...... ( -36.90)
>DroSim_CAF1 97984 114 + 1
AAGCCGUUCCGAUUAUUUAGGAUGCGUCCCAGUUUGGCUUUUGAGCCCUGAACUCUCG----AAGUGGGGCCACUAUAUAGUGGAAACAGCUCG-GCCAUUCUGGGCACGUUCAUAAAC
...................(((((.(.(((((..(((((...(((((((..(((....----.))).)))(((((....))))).....)))))-))))..)))))).)))))...... ( -38.40)
>DroEre_CAF1 88369 94 + 1
AAGGCGUUCCGAUUAUUUAGGAUGCGCCCCAGCUUGGCUUUUGAGCCCUGC------------------------GGAUAGUGGAAGCAUCUCG-GCCAUUCCGGGCACGUUCAUAAAC
...((((((..(....)..))))))((((..((..((((....))))..))------------------------(((..((.((......)).-))...)))))))............ ( -30.50)
>DroYak_CAF1 91547 114 + 1
AAGACGUUCCGAUUAUUUAGGAUGCGCCCCAGUUUGGCUUUUGAGCCCUAAACUCUCG----AAGUGGGGCCACUAUAUAGUGGAAACAUCUCG-GCCAUUCUGGGCACGUUCAUAAAC
...................(((((.((((.((..((((....(((.......))).((----(..((...(((((....)))))...))..)))-))))..)))))).)))))...... ( -37.50)
>DroAna_CAF1 90654 111 + 1
AGGACAUUUCGAUUAUUUAGAGUCC-UCUCCGCUUGGCAUUUGAACCCUGAAUCCCGGACUAAAAGGGGGCUACUG------GGAAACAUCUCG-GACAUUCGGGGCACGUUCAUAAAC
.((((..(((((.......((((..-.....)))).....)))))(((((((((((.........))))....(((------(((....)))))-)...)))))))...))))...... ( -27.70)
>consensus
AAGACGUUCCGAUUAUUUAGGAUGCGUCCCAGUUUGGCUUUUGAGCCCUGAACUCUCG____AAGUGGGGCCACUAUAUAGUGGAAACAGCUCG_GCCAUUCUGGGCACGUUCAUAAAC
...................(((((.(.(((((..((((...((((..................((((....))))......((....)).)))).))))..)))))).)))))...... (-23.48 = -24.23 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:01 2006