Locus 7406

Sequence ID 2L_DroMel_CAF1
Location 20,581,501 – 20,581,599
Length 98
Max. P 0.997791
window11901

overview

Window 1

Location 20,581,501 – 20,581,599
Length 98
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 66.77
Mean single sequence MFE -37.31
Consensus MFE -20.83
Energy contribution -21.32
Covariance contribution 0.50
Combinations/Pair 1.18
Mean z-score -2.29
Structure conservation index 0.56
SVM decision value 2.93
SVM RNA-class probability 0.997791
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20581501 98 - 22407834
UAA-AGGACUUGAUGAUGCCGCGCUGACGUGGCGCAUUCGUGGCACGUUGGU----UGGGUCGGGGACAUG----------GAGUCCAGGG----GAUGGGCCAGGGGGGGGGGGCC
...-.((((((.(((.(.((((((..(((((.(((....))).)))))..))----...).))).).))).----------))))))....----....((((..........)))) ( -40.00)
>DroSec_CAF1 96186 80 - 1
UAA-AGGACUUGAUGAUGCCGCGCUGACGUGGCGCAUUCGUGCCACGUUGGU----UGGGGCGGGGGCGUG----------GAGUCCAGUG----------------------CGGC
...-.((((((.(((.((((.(((..(((((((((....)))))))))..).----)).))))....))).----------))))))....----------------------.... ( -43.40)
>DroSim_CAF1 96895 80 - 1
UAA-AGGACUUGAUGAUGCCGCGCUGACGUGGCGCAUUCGUGGCACGUUGGU----UGGGGCGGGGGCGUG----------GAGUCCAGUG----------------------GGGC
...-.((((((.(((.((((.(((..(((((.(((....))).)))))..).----)).))))....))).----------))))))....----------------------.... ( -38.80)
>DroAna_CAF1 88856 112 - 1
UAACAGGACUUGAUGAUGCUGCGCUGACGUGGCGCAUUCGUGGCUUGUUUACAGGACGGAAAGGAGGCGGUGGGUUGUUGGGUGUCAAAAAAAAGAAGGGGAC-----UGGGGGGCG
.......(((..(..((.(((((((.....))))))(((((..((((....)))))))))...........).))..)..)))(((..........((....)-----)....))). ( -27.04)
>consensus
UAA_AGGACUUGAUGAUGCCGCGCUGACGUGGCGCAUUCGUGGCACGUUGGU____UGGGGCGGGGGCGUG__________GAGUCCAGUG______________________GGCC
.....((((((.......(((.(((((((((.(((....))).)))))))))....)))...(....).............)))))).............................. (-20.83 = -21.32 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:00 2006