Locus 7405

Sequence ID 2L_DroMel_CAF1
Location 20,580,390 – 20,580,499
Length 109
Max. P 0.855248
window11900

overview

Window 0

Location 20,580,390 – 20,580,499
Length 109
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 90.67
Mean single sequence MFE -34.64
Consensus MFE -24.40
Energy contribution -24.48
Covariance contribution 0.08
Combinations/Pair 1.05
Mean z-score -2.88
Structure conservation index 0.70
SVM decision value 0.80
SVM RNA-class probability 0.855248
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20580390 109 - 22407834
ACAGCAGCUGCAUUCAGAGAAAACAAAUAAAUAAACAACUGGCGAAAUGAGCACGGCGAAUGAAAGGACGCGGAUGCGGAUGCGCCUGCGGAUGUGGCUGCGGAUGUAA-----
...(((((..(((((.(......)................((((......((((.(((..(....)..))).).))).....))))...)))))..)))))........----- ( -35.10)
>DroSec_CAF1 95088 109 - 1
ACAGCAGCUGCAUUCAGAGAAAACAAAUAAAUAAACAACUGGCGAAAUGAGAACGGCGAAUGAAAGGACGCGGAUGCGGAUGCGGCUGCGGAUGUGGCUGCGGAUGUAA-----
...(((((..(((((....................((..((.((.........)).))..)).......((((.(((....))).)))))))))..)))))........----- ( -30.50)
>DroSim_CAF1 95802 109 - 1
ACAGCAGCUGCAUUCAGAGAAAACAAAUAAAUAAACAACUGGCGAAAUGAGCACGGCGAAUGAAAGGACGCGGAUGCGGAUGCGGCUGCGGAUGUGGCUGCGGAUGUAA-----
...(((((..(((((.......................(((((.......)).))).............((((.(((....))).)))))))))..)))))........----- ( -32.40)
>DroEre_CAF1 86298 108 - 1
ACAGCAGCUGCAUUCAGAGAAAACAAAUAAAUAAACAACUGGCGAAAUGAGCACGCCGCGUGGAAGGACGCGGAUGCGGCUGC------GGAUGCGGCUGCGGAUGUGGCUGCG
...(((((..(((((..........................((.......))...((((((......))))))..((((((((------....)))))))))))))..))))). ( -46.40)
>DroYak_CAF1 89436 103 - 1
ACAGCAGCUGCAUUCAGGGAAAACAAAUAAAUAAACAACUGGCGAAAUGAGCACGCCGAAUGAAAGGACGCGGAUGCGGAUGC------GGAUGGGGCUGCGGAUGUAA-----
...((((((.(((((....................((..(((((.........)))))..))......(((....))).....------))))).))))))........----- ( -28.80)
>consensus
ACAGCAGCUGCAUUCAGAGAAAACAAAUAAAUAAACAACUGGCGAAAUGAGCACGGCGAAUGAAAGGACGCGGAUGCGGAUGCG_CUGCGGAUGUGGCUGCGGAUGUAA_____
...((((((((((((....................((..((.((.........)).))..))......(((....)))...........))))))))))))............. (-24.40 = -24.48 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:59 2006