Locus 7403

Sequence ID 2L_DroMel_CAF1
Location 20,579,161 – 20,579,265
Length 104
Max. P 0.921032
window11896 window11897

overview

Window 6

Location 20,579,161 – 20,579,265
Length 104
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.30
Mean single sequence MFE -38.60
Consensus MFE -25.82
Energy contribution -26.35
Covariance contribution 0.53
Combinations/Pair 1.04
Mean z-score -2.82
Structure conservation index 0.67
SVM decision value 1.14
SVM RNA-class probability 0.921032
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20579161 104 + 22407834
UGCUUCAUUGGCUUGUGCAUUAUUUGUGCAACCUGGGUUGCAUCGUAAAAAAUGCAGAAGCAGCAGGCUGCCACUGCAGCUGGA-----------UCCUUUUGGCCGAGCACACG-----
(((((.....((((.((((((.((((((((((....)))))))...))).)))))).)))).((((.......)))).((..((-----------....))..)).)))))....----- ( -37.90)
>DroPse_CAF1 141070 98 + 1
UGCUUCAUUGGCUUGUGCAUUAUUUGUGCAACCUGGGUUGCAUCGUAAAAAAUGCACGAGCAGC-GCCUGAAAGUGCAGCUGCU-----------UCCUC--GCCCAUCCAC--------
.........(((..(((((((.((((((((((....)))))))...))).)))))))(((((((-((.(....).)).))))))-----------)....--))).......-------- ( -35.60)
>DroEre_CAF1 85069 109 + 1
UGCUUCAUUGGCUUGUGCAUUAUUUGUGCAACCUGGGUUGCAUCGUAAAAAAUGCAGGAGCAGCAGGCUGCCGCUGCAGCUGCC-----------UCCUUUUGGCGGAGCGCACGAGCGG
..........((((((((.((((..(((((((....))))))).))))....(((((..((((....))))..)))))(((.((-----------.((....)).))))))))))))).. ( -47.30)
>DroYak_CAF1 88237 104 + 1
UGCUUCAUUGGCUUGUGCAUUAUUUGUGCAACCUGGGUUGCAUCGUAAAAAAUGCAGGAGCAGCAGGCUGCCGCUGCAGCUGGA-----------UCCUUUUGGCUGAGCACACG-----
.((((.....((((.((((((.((((((((((....)))))))...))).)))))).))))...))))....(((.((((..((-----------....))..))))))).....----- ( -40.50)
>DroAna_CAF1 86585 103 + 1
UGCUUCAUUGGCUUGUGCAUUAUUUGUGCAACCUGGGUUGCAUCGUAAAAAAUGCAGGAGCAGC-GCCUGCAACGGCAGCUGCUACUCCUUGCUUUCCUUUCAG----------------
.((.......((((.((((((.((((((((((....)))))))...))).)))))).))))(((-(.((((....)))).)))).......))...........---------------- ( -34.70)
>DroPer_CAF1 147289 98 + 1
UGCUUCAUUGGCUUGUGCAUUAUUUGUGCAACCUGGGUUGCAUCGUAAAAAAUGCACGAGCAGC-GCCUGAAAGUGCAGCUGCU-----------UCCUC--GCCCAUCCAC--------
.........(((..(((((((.((((((((((....)))))))...))).)))))))(((((((-((.(....).)).))))))-----------)....--))).......-------- ( -35.60)
>consensus
UGCUUCAUUGGCUUGUGCAUUAUUUGUGCAACCUGGGUUGCAUCGUAAAAAAUGCAGGAGCAGC_GCCUGCAACUGCAGCUGCU___________UCCUUUUGGCCGAGCAC________
..........((((.((((((.((((((((((....)))))))...))).)))))).)))).((.(.((((....))))).))..................................... (-25.82 = -26.35 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 20,579,161 – 20,579,265
Length 104
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.30
Mean single sequence MFE -36.17
Consensus MFE -22.26
Energy contribution -22.32
Covariance contribution 0.06
Combinations/Pair 1.06
Mean z-score -2.72
Structure conservation index 0.62
SVM decision value 0.95
SVM RNA-class probability 0.888703
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20579161 104 - 22407834
-----CGUGUGCUCGGCCAAAAGGA-----------UCCAGCUGCAGUGGCAGCCUGCUGCUUCUGCAUUUUUUACGAUGCAACCCAGGUUGCACAAAUAAUGCACAAGCCAAUGAAGCA
-----..((((((((.((....)).-----------......(((((.(((((....))))).))))).......)))((((((....))))))........))))).((.......)). ( -33.60)
>DroPse_CAF1 141070 98 - 1
--------GUGGAUGGGC--GAGGA-----------AGCAGCUGCACUUUCAGGC-GCUGCUCGUGCAUUUUUUACGAUGCAACCCAGGUUGCACAAAUAAUGCACAAGCCAAUGAAGCA
--------((.....(((--...((-----------.(((((.((........))-)))))))(((((((.(((....((((((....)))))).))).)))))))..)))......)). ( -35.20)
>DroEre_CAF1 85069 109 - 1
CCGCUCGUGCGCUCCGCCAAAAGGA-----------GGCAGCUGCAGCGGCAGCCUGCUGCUCCUGCAUUUUUUACGAUGCAACCCAGGUUGCACAAAUAAUGCACAAGCCAAUGAAGCA
..(((.(((((((((.......)))-----------)((((..(((((((....)))))))..)))).........(.((((((....)))))))......))))).))).......... ( -42.50)
>DroYak_CAF1 88237 104 - 1
-----CGUGUGCUCAGCCAAAAGGA-----------UCCAGCUGCAGCGGCAGCCUGCUGCUCCUGCAUUUUUUACGAUGCAACCCAGGUUGCACAAAUAAUGCACAAGCCAAUGAAGCA
-----..(((((.......((((((-----------(.(((..(((((((....)))))))..))).)))))))..(.((((((....))))))).......))))).((.......)). ( -33.90)
>DroAna_CAF1 86585 103 - 1
----------------CUGAAAGGAAAGCAAGGAGUAGCAGCUGCCGUUGCAGGC-GCUGCUCCUGCAUUUUUUACGAUGCAACCCAGGUUGCACAAAUAAUGCACAAGCCAAUGAAGCA
----------------((....))...((.(((((((((..((((....))))..-)))))))))(((((.(((....((((((....)))))).))).))))).............)). ( -36.60)
>DroPer_CAF1 147289 98 - 1
--------GUGGAUGGGC--GAGGA-----------AGCAGCUGCACUUUCAGGC-GCUGCUCGUGCAUUUUUUACGAUGCAACCCAGGUUGCACAAAUAAUGCACAAGCCAAUGAAGCA
--------((.....(((--...((-----------.(((((.((........))-)))))))(((((((.(((....((((((....)))))).))).)))))))..)))......)). ( -35.20)
>consensus
________GUGCUCGGCCAAAAGGA___________AGCAGCUGCAGUGGCAGCC_GCUGCUCCUGCAUUUUUUACGAUGCAACCCAGGUUGCACAAAUAAUGCACAAGCCAAUGAAGCA
........................................(((((((..((((....))))..)))).........(.((((((....))))))).....................))). (-22.26 = -22.32 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:57 2006