| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,576,731 – 20,576,824 |
| Length | 93 |
| Max. P | 0.591259 |
| Location | 20,576,731 – 20,576,824 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 78.41 |
| Mean single sequence MFE | -19.68 |
| Consensus MFE | -11.01 |
| Energy contribution | -10.95 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.591259 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20576731 93 + 22407834 CCCAACGCCCAACGCCCACCACCCACCACCAAGCGGAAACACUUCUCACCUUCGCCAGGAGGUAAAAAAUGAUAGAAAUUCGGGGGGAAAUUC (((...((.....))......(((......(((.(....).)))...((((((....))))))..................))))))...... ( -21.00) >DroSec_CAF1 91369 83 + 1 CCCUACGCCCAC----------CUCCCACCAAGCGGAAACACUUCUCACCUACGCCAGGAGGUAAAAAAUGAUAGAAAAUCUGGGGGAAAUUC .....(.(((((----------((((......(((.................)))..)))))).......(((.....))).))).)...... ( -17.23) >DroSim_CAF1 92061 83 + 1 CCCUACGCCCAC----------CUCCCACCAAGCGGAAACACUUCUCACCUUCGCCAGGAGGUAAAAAAUGAUAGAAAAUCGGGGGGAAAUUC ...........(----------(((((...(((.(....).)))...((((((....))))))..................))))))...... ( -23.10) >DroYak_CAF1 85811 74 + 1 CCCACUGCCCG------------------UAGGGGAAAACAUUUCUUACCUUUACCAGGA-GUAAAAAAUGAUAGAAAAUCAGAGGGAAAUUC (((.((((((.------------------...)))....(((((.((((((......)).-)))).))))).........))).)))...... ( -17.40) >consensus CCCAACGCCCAC__________CUCCCACCAAGCGGAAACACUUCUCACCUUCGCCAGGAGGUAAAAAAUGAUAGAAAAUCGGGGGGAAAUUC .......(((....................(((.(....).)))...((((((....)))))).....................)))...... (-11.01 = -10.95 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:49 2006