Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,126,718 – 2,126,833 |
Length | 115 |
Max. P | 0.952151 |
Location | 2,126,718 – 2,126,833 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 89.91 |
Mean single sequence MFE | -35.46 |
Consensus MFE | -28.34 |
Energy contribution | -29.38 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.12 |
Mean z-score | -2.11 |
Structure conservation index | 0.80 |
SVM decision value | 1.42 |
SVM RNA-class probability | 0.952151 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2126718 115 + 22407834 CAAAUGCCACGCAUACAAAUGCCGGCUUACAACUGUUGCAUGUGUGUGCCGUACGUGUGCGCAGGUGAGCUUGUGUGCGUGAGAACUUUUGAUAAAUGCAGAUUUUAUUGUAAUU ((((..(((((((((((......(((((((..((((.(((..((((.....))))..)))))))))))))))))))))))).)....)))).....(((((......)))))... ( -37.90) >DroSec_CAF1 126964 115 + 1 CAAAUGCCACGCAUACGAAUGCCGGCUUACAACUGUUGCAUGUGUGUGCCGUACGUGUGCGCAGGUGAGCUUGUGUGCGUGAGAACUUUUGAUAAAUGCAGAUUUUAUUGUAAUU ((((..(((((((((((......(((((((..((((.(((..((((.....))))..)))))))))))))))))))))))).)....)))).....(((((......)))))... ( -37.20) >DroSim_CAF1 126056 104 + 1 CAAAUGCCACGCAUACGAAUGCCGGCUUACAACUGUUGCAUGUGUG-----------UGCGCAGGUGAGCUUGUGUGCGUGAGAACUUUUGAUAAAUGCAGAUUUUAUUGUAAUU ((((..(((((((((((......(((((((..((((.((((....)-----------)))))))))))))))))))))))).)....)))).....(((((......)))))... ( -32.20) >DroEre_CAF1 129710 106 + 1 ---------CGCAUACAAAUGCCAGCUUACAACUGUUGCAUGUGUGUGCCGUACGUGUGUGCAGGUGCGCUUGUGUGCGUGAGAACUUUUGAUAAAUGCAGAUUUUAUUGUAAUU ---------(((((((((((((.(((........)))))))..(((..((((((....)))).))..)))))))))))).................(((((......)))))... ( -31.10) >DroYak_CAF1 132118 115 + 1 CAAAGGCCACGCAUACAGAUGCCGACUUACAACUGUUGCAUGUGUGUGCCGUGCGUGUGUGCAGGUGCGCUUGUGUGCGUGAGAACUUUUGAUAAAUGCAGAUUUUAUUGUAAUU ((((((((((((((((((((((.(((........)))))))..(((..((.((((....))))))..)))))))))))))).)..)))))).....(((((......)))))... ( -38.90) >consensus CAAAUGCCACGCAUACAAAUGCCGGCUUACAACUGUUGCAUGUGUGUGCCGUACGUGUGCGCAGGUGAGCUUGUGUGCGUGAGAACUUUUGAUAAAUGCAGAUUUUAUUGUAAUU .......((((((((((......(((((((..((((.(((..((((.....))))..))))))))))))))))))))))))...............(((((......)))))... (-28.34 = -29.38 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:30 2006