Locus 74

Sequence ID 2L_DroMel_CAF1
Location 264,275 – 264,381
Length 106
Max. P 0.704922
window114

overview

Window 4

Location 264,275 – 264,381
Length 106
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 81.65
Mean single sequence MFE -43.65
Consensus MFE -27.49
Energy contribution -26.32
Covariance contribution -1.16
Combinations/Pair 1.20
Mean z-score -2.04
Structure conservation index 0.63
SVM decision value 0.36
SVM RNA-class probability 0.704922
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 264275 106 + 22407834
CCCUUAUCACGGAUGUGGGCAGCAGCAUCAGCUCCUUUUU---GCCGCACGAAGGGCUCGUGCUGGUGCUCAG------GUCGCUGCUCUCCAAGGAACUUCUGCUUGGCGAACU
...........(((.((((((.((((((.(((.(((((.(---(...)).)))))))).)))))).)))))).------))).....((.(((((.(.....).))))).))... ( -41.90)
>DroPse_CAF1 83502 112 + 1
CUCGGAUCACGGAUGUCGGCAACAGCAUUAGCUCCUUCUUGGAGCCACUGGAGGGAC---UGCUGGUGCUCACCGAUUCGCUGCUGCUUUCUGCGGAGCUCCGACUCGGAGAACU
(((.((...((((.(((((....((((((((((((((((.(......).))))))).---.)))))))))..)))))..(((.((((.....)))))))))))..)).))).... ( -46.10)
>DroSim_CAF1 69254 106 + 1
CCCUUAUCACGGAUGUGGGCAGCAGCAUCAGCUCCUUGUU---GCCGCACGAAGGGCUCGUGCUGGUGCUCAG------GUCGCUGCUCUCCAAGGAACUUCUGCUUGGCGAACU
...........(((.((((((.((((((.(((((.((((.---.....)))).))))).)))))).)))))).------))).....((.(((((.(.....).))))).))... ( -42.20)
>DroEre_CAF1 62196 106 + 1
CCCUUAUCACGGAUGUGGGCAGCAGCAUCAGCUCCUUGUU---GCCACACGAAGGGCUCGUGCUGGUGCUCAG------AUCGCUGCUCUCCAAGGAACUUCUGCUUGGCGAACU
...........(((.((((((.((((((.(((((.((((.---.....)))).))))).)))))).)))))).------))).....((.(((((.(.....).))))).))... ( -41.90)
>DroYak_CAF1 60017 106 + 1
CCCUUAUCACGGAUGUGGGCAGCAGCAUCAGCUCCUUGUU---GCCGCACGAAGGACUCGUGCUGGUGCUCAG------AUCGCUGCUCUCCAAGGAACUUCUGCUUGGCGAGCU
...........(((.((((((.((((((.((.(((((((.---.....)).))))))).)))))).)))))).------)))...((((.(((((.(.....).))))).)))). ( -45.00)
>DroPer_CAF1 84163 112 + 1
CUCGGAUCACGGAUGUCGGCAACAGCAUCAGCUCCUUCUUGGAGCCACUUGAGGGAC---UGCUGGUGCUCACCGAUUCGCUGCUGCUCUCUGCGGAGCUCCGACUCGGCGAACU
.(((((.....((.(((((....(((((((((((((((..(......)..)))))).---.)))))))))..)))))))(((.((((.....))))))))))))........... ( -44.80)
>consensus
CCCUUAUCACGGAUGUGGGCAGCAGCAUCAGCUCCUUGUU___GCCACACGAAGGACUCGUGCUGGUGCUCAG______GUCGCUGCUCUCCAAGGAACUUCUGCUUGGCGAACU
......((.(.((.(((((((((((((((((((((((..............))))).....)))))))))............)))))..((....))....)))))).).))... (-27.49 = -26.32 +  -1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:05 2006