Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,574,974 – 20,575,076 |
Length | 102 |
Max. P | 0.999991 |
Location | 20,574,974 – 20,575,076 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 94.55 |
Mean single sequence MFE | -31.82 |
Consensus MFE | -28.76 |
Energy contribution | -29.04 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.07 |
Mean z-score | -2.76 |
Structure conservation index | 0.90 |
SVM decision value | 4.26 |
SVM RNA-class probability | 0.999852 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20574974 102 + 22407834 UUCUUGUGUGUGCGUGUGUUAGUUUCAUAAUGUAACCGGAUGUGCCAACACAAUGCUCGCACAUCCGCUUGCCAGACAACAG--GACAACAGCUGUCACACACA ....(((((((((((.((((...........((((.(((((((((...(.....)...))))))))).))))..........--))))...)).).)))))))) ( -32.20) >DroSec_CAF1 89729 99 + 1 ---UUGUGUGUGCGUGUGUUAGUUUCAUAAUGUAACCGGAUGUGCCAACACAAUGCUCGCACAUCCGCUUGCCAGACAACAG--GACAACAGCUGUCACACACA ---.(((((((((((.((((...........((((.(((((((((...(.....)...))))))))).))))..........--))))...)).).)))))))) ( -32.20) >DroSim_CAF1 90403 102 + 1 UUCUUGUGUGUGCGUGUGUUAGUUUCAUAAUGUAACCGGAUGUGCCAACACAAUGCUCGCACAUCCGCUUGCCAGACAACAG--GACAACAGCUGUCACACACA ....(((((((((((.((((...........((((.(((((((((...(.....)...))))))))).))))..........--))))...)).).)))))))) ( -32.20) >DroYak_CAF1 84143 102 + 1 UUAUUGUGUGUGCGUGUGUUAGUUUCAUAAUGUAACCGGAUGUGCCAACACAAUGCUCGCACAUCCGCUUGCCAGACAACAG--GACAACAGCUGUCACACACA ....(((((((((((.((((...........((((.(((((((((...(.....)...))))))))).))))..........--))))...)).).)))))))) ( -32.20) >DroAna_CAF1 81998 104 + 1 UCUGUGUAUAUGUGUGUGUUAGUUUCAUAAUGUAACCGGAUGUGCCAACACAAUGCUCGCACAUCCGCUUUCUAGACAACAGAGAACAACAGCUGUCACACACA ..........((((((((.(((((............(((((((((...(.....)...))))))))).(((((.......))))).....))))).)))))))) ( -30.30) >consensus UUCUUGUGUGUGCGUGUGUUAGUUUCAUAAUGUAACCGGAUGUGCCAACACAAUGCUCGCACAUCCGCUUGCCAGACAACAG__GACAACAGCUGUCACACACA ....(((((((((((.((((...........((((.(((((((((...(.....)...))))))))).))))............))))...)).).)))))))) (-28.76 = -29.04 + 0.28)
Location | 20,574,974 – 20,575,076 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 94.55 |
Mean single sequence MFE | -38.42 |
Consensus MFE | -37.00 |
Energy contribution | -36.52 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.11 |
Mean z-score | -3.67 |
Structure conservation index | 0.96 |
SVM decision value | 5.65 |
SVM RNA-class probability | 0.999991 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20574974 102 - 22407834 UGUGUGUGACAGCUGUUGUC--CUGUUGUCUGGCAAGCGGAUGUGCGAGCAUUGUGUUGGCACAUCCGGUUACAUUAUGAAACUAACACACGCACACACAAGAA (((((((((((((.......--..))))))..((...(((((((((.(((.....))).)))))))))((((...........))))....))))))))).... ( -38.70) >DroSec_CAF1 89729 99 - 1 UGUGUGUGACAGCUGUUGUC--CUGUUGUCUGGCAAGCGGAUGUGCGAGCAUUGUGUUGGCACAUCCGGUUACAUUAUGAAACUAACACACGCACACACAA--- (((((((((((((.......--..))))))..((...(((((((((.(((.....))).)))))))))((((...........))))....))))))))).--- ( -38.70) >DroSim_CAF1 90403 102 - 1 UGUGUGUGACAGCUGUUGUC--CUGUUGUCUGGCAAGCGGAUGUGCGAGCAUUGUGUUGGCACAUCCGGUUACAUUAUGAAACUAACACACGCACACACAAGAA (((((((((((((.......--..))))))..((...(((((((((.(((.....))).)))))))))((((...........))))....))))))))).... ( -38.70) >DroYak_CAF1 84143 102 - 1 UGUGUGUGACAGCUGUUGUC--CUGUUGUCUGGCAAGCGGAUGUGCGAGCAUUGUGUUGGCACAUCCGGUUACAUUAUGAAACUAACACACGCACACACAAUAA (((((((((((((.......--..))))))..((...(((((((((.(((.....))).)))))))))((((...........))))....))))))))).... ( -38.70) >DroAna_CAF1 81998 104 - 1 UGUGUGUGACAGCUGUUGUUCUCUGUUGUCUAGAAAGCGGAUGUGCGAGCAUUGUGUUGGCACAUCCGGUUACAUUAUGAAACUAACACACACAUAUACACAGA (((((((((((((...........))))))..(.((.(((((((((.(((.....))).))))))))).)).)..............))))))).......... ( -37.30) >consensus UGUGUGUGACAGCUGUUGUC__CUGUUGUCUGGCAAGCGGAUGUGCGAGCAUUGUGUUGGCACAUCCGGUUACAUUAUGAAACUAACACACGCACACACAAGAA (((((((((((((...........))))))..(.((.(((((((((.(((.....))).))))))))).)).)..................)))))))...... (-37.00 = -36.52 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:46 2006