| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,571,758 – 20,571,863 |
| Length | 105 |
| Max. P | 0.899250 |
| Location | 20,571,758 – 20,571,863 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 73.29 |
| Mean single sequence MFE | -25.35 |
| Consensus MFE | -14.40 |
| Energy contribution | -15.93 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.57 |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.899250 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20571758 105 - 22407834 CUGAUGC-GUUGCGAUGCCUUUACCUAACUGCAUCCGGCAGACAGUUCAGCUGGAUCCAGCUUCAGGCUCACUUUCCACCAUUUUCCCCUCCACCCAGAACUCCCC .......-((((.(((((............)))))))))....((((((((((....)))))...((........))....................))))).... ( -20.80) >DroPse_CAF1 132098 87 - 1 CUGCUGCUGCUGCGUUGCCUUUACCUAACUGCAUCCGGCUGCCAG------UGGCUUCAGCAGCAGGACUUCCUCCCACAAU---CCCCA-----UAGAAC----- ...(((((((((....(((........((((((......)).)))------))))..)))))))))................---.....-----......----- ( -23.10) >DroSec_CAF1 86580 86 - 1 CUGAUGC-GUUGCGAUGCCUUUACCUAACUGCAUCCGGCAGACA-----GCUGGAUCAAGCUUCAGGCUCGCUUUCCACCAUUUUCCCCGCC-------------- .((.((.-(..((((.((((..(.((...((.(((((((.....-----))))))))))).)..))))))))..).)).))...........-------------- ( -22.60) >DroSim_CAF1 87275 91 - 1 CUGAUGC-GUUGCGAUGCCUUUACCUAACUGCAUCCGGCAGACAGUUCAGCUGGAUCCAGCUUCAGGCUCGCUAUCCACCAUUUUCCCCGCC-------------- .((.((.-((.((((.((((........(((.(((((((.((....)).))))))).)))....)))))))).)).)).))...........-------------- ( -25.10) >DroEre_CAF1 78644 97 - 1 CCGAUGC-GUCGCGAUGCCUUCACCUAACUGCAUCCGGCUGACAGUUCAGCUGGAUUCAGCUUCAGGCUCGCUCUCCUCCAGCU-----UCCACCCAGCUCCC--- .......-...((((.((((........(((.((((((((((....)))))))))).)))....))))))))........((((-----.......))))...--- ( -31.10) >DroYak_CAF1 80865 101 - 1 CCGAUGC-GUUGCGAUAGCUU-ACCUAACUGCAUCCGGCUGACAGUUCAGCUGGAUUCAGCUUCAGGCUCGCUUUCCUCCAUUUCGCUACCCACACAGUUCUC--- ..(.((.-((.((((.(((..-.((((((((.((((((((((....)))))))))).))).)).)))...)))..........)))).)).))).........--- ( -29.40) >consensus CUGAUGC_GUUGCGAUGCCUUUACCUAACUGCAUCCGGCAGACAGUUCAGCUGGAUCCAGCUUCAGGCUCGCUUUCCACCAUUUUCCCCGCC___CAG__C_____ ...........((((.((((........(((.(((((((..........))))))).)))....)))))))).................................. (-14.40 = -15.93 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:37 2006