Locus 7393

Sequence ID 2L_DroMel_CAF1
Location 20,563,271 – 20,563,371
Length 100
Max. P 0.740595
window11874 window11875

overview

Window 4

Location 20,563,271 – 20,563,371
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 100.00
Mean single sequence MFE -24.80
Consensus MFE -24.80
Energy contribution -24.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.61
Structure conservation index 1.00
SVM decision value 0.45
SVM RNA-class probability 0.740595
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20563271 100 + 22407834
ACAACGACGACAUUUAACCUACAGACUUUUGUGCCGGCACUGAAAAGAUGGCAUUGCAAUAUUAUGCGCCAUCGCCAUUCAGCGCAUCCCUGCGCAUCUA
......................(((....(((((..((.(((((..((((((...(((......)))))))))....))))).))......)))))))). ( -24.80)
>DroSec_CAF1 85536 100 + 1
ACAACGACGACAUUUAACCUACAGACUUUUGUGCCGGCACUGAAAAGAUGGCAUUGCAAUAUUAUGCGCCAUCGCCAUUCAGCGCAUCCCUGCGCAUCUA
......................(((....(((((..((.(((((..((((((...(((......)))))))))....))))).))......)))))))). ( -24.80)
>DroSim_CAF1 86235 100 + 1
ACAACGACGACAUUUAACCUACAGACUUUUGUGCCGGCACUGAAAAGAUGGCAUUGCAAUAUUAUGCGCCAUCGCCAUUCAGCGCAUCCCUGCGCAUCUA
......................(((....(((((..((.(((((..((((((...(((......)))))))))....))))).))......)))))))). ( -24.80)
>consensus
ACAACGACGACAUUUAACCUACAGACUUUUGUGCCGGCACUGAAAAGAUGGCAUUGCAAUAUUAUGCGCCAUCGCCAUUCAGCGCAUCCCUGCGCAUCUA
......................(((....(((((..((.(((((..((((((...(((......)))))))))....))))).))......)))))))). (-24.80 = -24.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 20,563,271 – 20,563,371
Length 100
Sequences 3
Columns 100
Reading direction reverse
Mean pairwise identity 100.00
Mean single sequence MFE -31.10
Consensus MFE -31.10
Energy contribution -31.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.32
Structure conservation index 1.00
SVM decision value -0.01
SVM RNA-class probability 0.527106
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20563271 100 - 22407834
UAGAUGCGCAGGGAUGCGCUGAAUGGCGAUGGCGCAUAAUAUUGCAAUGCCAUCUUUUCAGUGCCGGCACAAAAGUCUGUAGGUUAAAUGUCGUCGUUGU
..((((.(((..(((((((((((....(((((((((......)))...))))))..)))))))).(((......))).....)))...)))))))..... ( -31.10)
>DroSec_CAF1 85536 100 - 1
UAGAUGCGCAGGGAUGCGCUGAAUGGCGAUGGCGCAUAAUAUUGCAAUGCCAUCUUUUCAGUGCCGGCACAAAAGUCUGUAGGUUAAAUGUCGUCGUUGU
..((((.(((..(((((((((((....(((((((((......)))...))))))..)))))))).(((......))).....)))...)))))))..... ( -31.10)
>DroSim_CAF1 86235 100 - 1
UAGAUGCGCAGGGAUGCGCUGAAUGGCGAUGGCGCAUAAUAUUGCAAUGCCAUCUUUUCAGUGCCGGCACAAAAGUCUGUAGGUUAAAUGUCGUCGUUGU
..((((.(((..(((((((((((....(((((((((......)))...))))))..)))))))).(((......))).....)))...)))))))..... ( -31.10)
>consensus
UAGAUGCGCAGGGAUGCGCUGAAUGGCGAUGGCGCAUAAUAUUGCAAUGCCAUCUUUUCAGUGCCGGCACAAAAGUCUGUAGGUUAAAUGUCGUCGUUGU
..((((.(((..(((((((((((....(((((((((......)))...))))))..)))))))).(((......))).....)))...)))))))..... (-31.10 = -31.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:36 2006