Locus 7392

Sequence ID 2L_DroMel_CAF1
Location 20,561,557 – 20,561,667
Length 110
Max. P 0.526783
window11873

overview

Window 3

Location 20,561,557 – 20,561,667
Length 110
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 82.77
Mean single sequence MFE -25.81
Consensus MFE -18.58
Energy contribution -18.64
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -1.49
Structure conservation index 0.72
SVM decision value -0.01
SVM RNA-class probability 0.526783
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20561557 110 - 22407834
AGAGACUGUUUCAAGUGUGACUCAAUCGAGGCAAUAUACCCUU-GUAGUUUCUCCCUGUGUAUGAUCUGUAUAUAUAGUUGAGUGGCAUACAAAUUGCCGCCCAUCUUAUU
((((((((...((((.(((.(((....)))......))).)))-)))))))))..(((((((((.....))))))))).((.((((((.......)))))).))....... ( -27.40)
>DroSec_CAF1 83862 97 - 1
UGAGACUGUUAUAAGUGCGGCUUAAUAGAC--------------GUAGUUUCUUCCUGUGUAUGAUCUGUAUAUAUAGUUGAGUGGCAUACAAAUUGCCGCCCAUCUUAUU
.(((((((((.((((.....))))...)))--------------..))))))...(((((((((.....))))))))).((.((((((.......)))))).))....... ( -22.70)
>DroSim_CAF1 84587 97 - 1
UGAGACUGUUUUAAGUGCGAAUUAAUAGAG--------------GUAGUUUCUCCCUGUGUAUGAUCUGUAUAUAUAGUUGAGUGGCAUACAAAUUGCCGCCCAUCUUAUU
.(((((((..((...............)).--------------.)))))))...(((((((((.....))))))))).((.((((((.......)))))).))....... ( -22.66)
>DroYak_CAF1 78145 111 - 1
AGGGACUGUUUAAAAUGUGGCUUAAUCGAGAGAAUGGACUUUUUUGAGUUUCUCUCUGUGUAUGAUCUGUAUAUAUAGUUGAGUGGCAUACAAAUUGCCGCCCAUCUUAUU
.(((.(.((.....((((.(((((((.((((((...(((((....)))))))))))((((((((.....))))))))))))))).)))).......)).))))........ ( -30.50)
>consensus
AGAGACUGUUUUAAGUGCGACUUAAUAGAG______________GUAGUUUCUCCCUGUGUAUGAUCUGUAUAUAUAGUUGAGUGGCAUACAAAUUGCCGCCCAUCUUAUU
.(((((((.....................................)))))))...(((((((((.....))))))))).((.((((((.......)))))).))....... (-18.58 = -18.64 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:34 2006