Locus 7390

Sequence ID 2L_DroMel_CAF1
Location 20,556,647 – 20,556,743
Length 96
Max. P 0.576522
window11870

overview

Window 0

Location 20,556,647 – 20,556,743
Length 96
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 82.60
Mean single sequence MFE -25.43
Consensus MFE -18.61
Energy contribution -18.67
Covariance contribution 0.06
Combinations/Pair 1.26
Mean z-score -1.51
Structure conservation index 0.73
SVM decision value 0.09
SVM RNA-class probability 0.576522
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20556647 96 + 22407834
GCGAAACAGCAUUCAGCCAGAAUGAUUCUUAU--UUUU-UUUA----AAUGUGAAUAUGUGAA--ACGCCAGCGGGGACAAUGUGAUGUCUUCAUCGCAUUCGCU
(((..(((.(((((.....)))))((((.(((--((..-...)----)))).)))).)))...--.))).((((....)(((((((((....))))))))).))) ( -24.90)
>DroSec_CAF1 79073 97 + 1
GCGAAACAGCAUUCAGCCAGAAUGAUUCUUAU--UUUUUUUUA----UAUGUGAAUAUGUGAA--AUGCCAGCGGGGACAAUGUGAUGUCUCCAUCGCAUUCGCU
(((((....(((((.....)))))........--....(((((----((((....))))))))--)(((.(..(((((((......))))))).).)))))))). ( -25.10)
>DroSim_CAF1 79741 97 + 1
GCGAAACAGCAUUCAGCCAGAAUGAUUCUUAU--UUUUUUUUA----UAUGUGAAUAUGUGAA--AUGCCAGCGGGGACAAUGUGAUGUCUCCAUCGCAUUCGCU
(((((....(((((.....)))))........--....(((((----((((....))))))))--)(((.(..(((((((......))))))).).)))))))). ( -25.10)
>DroEre_CAF1 70022 94 + 1
GCGUAUCAGCAUUCAGCCAGAAUGAUUCUUAU--UU---UGUA----UAUGUGAAUAUGUGAA--AUGCCAGCGGGGACAACGUGAUGUCUCCAUCGCACUCGCU
(((.....((((((.....))))......(((--((---..((----(((....)))))..))--)))...))(((((((......)))))))..)))....... ( -24.40)
>DroYak_CAF1 73208 94 + 1
GCGAAACUGCAUUCAGCAAGAAUGAUUCUUAU--UU---UGUA----UAUGUGAAUAUGUGAA--AAACCAGUGGGGACAAUGUGAUGUCUCCAUCGCACUCGCU
((((.(((((((((.....))))).......(--((---..((----(((....)))))..))--)...))))(((((((......))))))).))))....... ( -28.00)
>DroAna_CAF1 71437 102 + 1
GCGAAUGAAAAUCCCGUCGGGAUGAAGUUUAUACUU---UGUAUUUUUUUGUUCAUAUGCGAAAAAUGCCAACGGGCAUGCCGUGAUGUCUCUAUCCCCUUCGCU
(((((.((........))((((((.((....(((..---......(((((((......)))))))(((((....)))))...)))....)).)))))).))))). ( -25.10)
>consensus
GCGAAACAGCAUUCAGCCAGAAUGAUUCUUAU__UU___UGUA____UAUGUGAAUAUGUGAA__AUGCCAGCGGGGACAAUGUGAUGUCUCCAUCGCAUUCGCU
(((((....(((((.....))))).................................(((((.....(....)(((((((......))))))).)))))))))). (-18.61 = -18.67 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:31 2006