| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,553,074 – 20,553,166 |
| Length | 92 |
| Max. P | 0.688787 |
| Location | 20,553,074 – 20,553,166 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.81 |
| Mean single sequence MFE | -14.72 |
| Consensus MFE | -9.95 |
| Energy contribution | -9.73 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.688787 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20553074 92 + 22407834 -----CCGG-----------------CCCCUUUUCUCCCUUUGGAAAUUUUCACACAUGAUUUUUUCAUAGACCAAUUUGCACACAUUAUAAGUUUG-CAACCGCAAAUUGCCAC----- -----..((-----------------(...........((.((((((...(((....)))..)))))).))....................((((((-(....))))))))))..----- ( -16.00) >DroPse_CAF1 119282 97 + 1 -----UCC----------------CUCACG--UUCCGCUCUUUGAAAUUUUCACACAUGAUUUUUUCAUAGACCAAUUUGCACACAUUAUAAGUUUUUGGACCGCAAAUUGCCGCCAGGC -----..(----------------((..((--......(((.(((((...(((....)))...))))).))).((((((((...((..(.....)..))....)))))))).))..))). ( -16.60) >DroEre_CAF1 67062 90 + 1 -----CCCG-----------------CCCG--UCUUCGCCUCUGGAAUUUUCACACAUGAUUUUUUCAUAGACCAAUUUGCACACAUUAUAAGUUUG-CAACCGCAAAUUGCCAC----- -----....-----------------....--.....((((.(((((...(((....)))...))))).))......(((((.((.......)).))-)))..))..........----- ( -11.30) >DroYak_CAF1 70051 100 + 1 -----CCUG-----CCCUGGCAUG--CCCG--UUUCCCCUUUUGAAAUUUUCACACAUGAUUUUUUCAUAGACCAAUUUGCACACAUUAUAAGUUUG-CAACCGCAAAUUGCCAC----- -----....-----...(((((((--(...--......((..(((((...(((....)))...))))).))......(((((.((.......)).))-)))..)))...))))).----- ( -17.70) >DroAna_CAF1 68186 112 + 1 UGCCUCCGACCUGUUUCUUGCUUCCUCACU--UACUCCCUUUUGAAAUUUUCACACAUGAUUUUUUCAUAGACCAAUUUGCACACAUUAUAAGUUUU-CAACCGCAAAUUGCCAC----- ..............................--......((..(((((...(((....)))...))))).))..((((((((................-.....))))))))....----- ( -10.40) >DroPer_CAF1 124817 98 + 1 -----UCCU---------------CUCACG--UUCCGCUCUUUGAAAUUUUCACACAUGAUUUUUUCAUAGACCAAUUUGCACACAUUAUAAGUUUUUGGACCGCAAAUUGCCAGCAGGC -----....---------------......--..(((((((.(((((...(((....)))...))))).))).((((((((...((..(.....)..))....))))))))...)).)). ( -16.30) >consensus _____CCCG_________________CACG__UUCCCCCCUUUGAAAUUUUCACACAUGAUUUUUUCAUAGACCAAUUUGCACACAUUAUAAGUUUG_CAACCGCAAAUUGCCAC_____ .......................................((.(((((...(((....)))...))))).))..((((((((......................))))))))......... ( -9.95 = -9.73 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:28 2006