Locus 7387

Sequence ID 2L_DroMel_CAF1
Location 20,552,583 – 20,552,676
Length 93
Max. P 0.893577
window11866

overview

Window 6

Location 20,552,583 – 20,552,676
Length 93
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 79.75
Mean single sequence MFE -21.12
Consensus MFE -14.71
Energy contribution -15.76
Covariance contribution 1.06
Combinations/Pair 1.04
Mean z-score -1.96
Structure conservation index 0.70
SVM decision value 0.98
SVM RNA-class probability 0.893577
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20552583 93 - 22407834
-UCCAGAAAAUGAAAUCAUUUGAAAGUGUUUGCAGCCCCAUCGC--------------------CCCAUGCAAACAAUAAAGCAGAAAAGGGUUUCAACUUUCUUCUGCAAUGA
-......(((((....))))).....((((((((((......))--------------------....)))))))).....((((((.(((((....))))).))))))..... ( -22.20)
>DroPse_CAF1 118623 91 - 1
GUGCGCAAAAUGAAAUCAUUUGAAAGUGUUUGCCUCCCCGUUGG--------------------CCCAAGCAAACAAUAAAGCAAAA-AGGGUUUUUACUUUCCUUUACG-C-A
.(((((.(((((....))))).....(((((((...((....))--------------------.....))))))).....))..((-((((.........))))))..)-)-) ( -18.50)
>DroSec_CAF1 75312 93 - 1
-UCCAGAAAAUGAAAUCAUUUGAAAGUGUUUGCAGCCCCAUCGC--------------------CCCAUGCAAACAAUAAAGCAGAAAAGGGUUUCAACUUUCUUCUGCAAUAA
-......(((((....))))).....((((((((((......))--------------------....)))))))).....((((((.(((((....))))).))))))..... ( -22.20)
>DroSim_CAF1 75989 93 - 1
-UCCGGAAAAUGAAAUCAUUUGAAAGUGUUUGCAGCCCCAUCGC--------------------CCCAUGCAAACAAUAAAGCAGAAAAGGGUUUCAACUUUCUUCUGCAAUAA
-......(((((....))))).....((((((((((......))--------------------....)))))))).....((((((.(((((....))))).))))))..... ( -22.20)
>DroYak_CAF1 69512 106 - 1
-UCCAGAAAAUGAAAUCAUUUGAAAGUGUUUGCAUCCCCAUCGCCUCAAUUGCGAACUCUCGAGCCCAUGCAAACAAUAAAGCAGAAAAGGGU-------UUCUUCUGCAAUAA
-..(((((...((((((.((((....(((((((((.....((((.......)))).((....))...)))))))))......))))....)))-------))))))))...... ( -23.10)
>DroPer_CAF1 124156 91 - 1
GUGCGCAAAAUGAAAUCAUUUGAAAGUGUUUGCCUCCCCGUUGG--------------------CCCAAGCAAACAAUAAAGCAAAA-AGGGUUUUUACUUUCCUUUACG-C-A
.(((((.(((((....))))).....(((((((...((....))--------------------.....))))))).....))..((-((((.........))))))..)-)-) ( -18.50)
>consensus
_UCCAGAAAAUGAAAUCAUUUGAAAGUGUUUGCAGCCCCAUCGC____________________CCCAUGCAAACAAUAAAGCAGAAAAGGGUUUCAACUUUCUUCUGCAAUAA
.......(((((....))))).....((((((((..................................)))))))).....((((((.(((((....))))).))))))..... (-14.71 = -15.76 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:28 2006