Locus 7385

Sequence ID 2L_DroMel_CAF1
Location 20,547,727 – 20,547,827
Length 100
Max. P 0.983803
window11863

overview

Window 3

Location 20,547,727 – 20,547,827
Length 100
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 89.67
Mean single sequence MFE -37.10
Consensus MFE -32.67
Energy contribution -32.17
Covariance contribution -0.50
Combinations/Pair 1.26
Mean z-score -2.45
Structure conservation index 0.88
SVM decision value 1.95
SVM RNA-class probability 0.983803
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20547727 100 + 22407834
AGUGUUUUCUUUUGGGGCUGUAGACGCGCUGCAGGACAUUCCCAGUGCAAUUUGCCCGGUUUCCUGUGGUGAGAAAAGUGUCCUCGUUUCUACGCCCUUU
.............(((((.(((((.((((..(((((.....((.(.((.....))).))..)))))..))(((.........))))).)))))))))).. ( -32.90)
>DroSec_CAF1 70583 100 + 1
AGUGUUUUCUUUUGGGGCUGUGGACGCGCUGCAGGACAUUCCCAGUGCAAUUUGCCCGGUGUCCUGCGGUGAGAGAAGUAUCCUCGCUUCUACGCCUUUU
.............(((((.(((((.(((((((((((((...((.(.((.....))).)))))))))))))(((.((....))))))).)))))))))).. ( -40.30)
>DroSim_CAF1 71222 100 + 1
AGUGUUUUCUUUUGGGGCUGUGGACGCGCUGCAGGACAUUCCCAGUGCAAUUUGCCCGGUGUCCUGCGGAGAGAGAAGUGUCCUCGCUUCUACGCUUUUU
(((((........(((((.(.((((((.((((((((((...((.(.((.....))).))))))))))))........)))))).)))))).))))).... ( -37.50)
>DroYak_CAF1 64724 99 + 1
AGUGUUUUCCUUUGGGGCUGUGGACGCGCUGCAGGACAUUCGCACUGCAAU-UGUUCGGUGUCCUGUGGCGAGAAAAAUAUCCUCGCUUUUGCCCCUUUU
.............(((((...(((.((((..((((((((.((.((......-.)).))))))))))..))(((.........)))))))).))))).... ( -37.70)
>consensus
AGUGUUUUCUUUUGGGGCUGUGGACGCGCUGCAGGACAUUCCCAGUGCAAUUUGCCCGGUGUCCUGCGGUGAGAAAAGUAUCCUCGCUUCUACGCCUUUU
.............(((((.(((((.(((((((((((((((..(((......)))...)))))))))))))(((.........))))).)))))))))).. (-32.67 = -32.17 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:25 2006