Locus 7383

Sequence ID 2L_DroMel_CAF1
Location 20,545,830 – 20,545,920
Length 90
Max. P 0.517258
window11860

overview

Window 0

Location 20,545,830 – 20,545,920
Length 90
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 97.44
Mean single sequence MFE -23.45
Consensus MFE -19.85
Energy contribution -19.85
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.59
Structure conservation index 0.85
SVM decision value -0.03
SVM RNA-class probability 0.517258
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20545830 90 + 22407834
AGCGCCGGAAAUCGGAACUAAUUUAUGUGGAAAUGAGUUAAUUUCCUUUGCCUGAAUUGUGUGAUUUUCUAGCGAUUUCAUCG---CUGCCAU
.((...((((((((..((.((((((.((((((((......))))))...)).)))))))).)))))))).((((((...))))---))))... ( -23.80)
>DroSec_CAF1 68754 90 + 1
AGCGCCGGAAAUCGGAACUAAUUUAUGUGGAAAUGAGUUAAUUUCCUUUGCCUGAAUUGUGUGAUUUUCUAGCGAUUUCAUCG---CUGCCAU
.((...((((((((..((.((((((.((((((((......))))))...)).)))))))).)))))))).((((((...))))---))))... ( -23.80)
>DroSim_CAF1 69376 90 + 1
AGCGCCGGAAAUCGGAACUAAUUUAUGUGGAAAUGAGUUAAUUUCCUUUGCCUGAAUUGUGUGAUUUUCUAGCGAUUUCAUCG---CUGCCAU
.((...((((((((..((.((((((.((((((((......))))))...)).)))))))).)))))))).((((((...))))---))))... ( -23.80)
>DroEre_CAF1 60285 90 + 1
GGCGCCGGAAAUCGGAACUAAUUUAUGUGGAAAUGAGUUAAUUUCCUUUGCCUGAAUUGUGUGAUUUUCUAGCGAUUUCACCG---CUGCCAU
(((...((((((((..((.((((((.((((((((......))))))...)).)))))))).)))))))).((((.......))---))))).. ( -26.10)
>DroYak_CAF1 62924 90 + 1
AGCGCCGGAAAUCGGAACUAAUUUAUGUGGAAAUGAGUUAAUUUCCUUUGCCUGAAUUGUGUGAUUUUCUAGCGAUUUCAUUG---CUGCCAU
.((...((((((((..((.((((((.((((((((......))))))...)).)))))))).)))))))).((((((...))))---))))... ( -21.70)
>DroAna_CAF1 60797 93 + 1
AACGCCGGAAAUCGGAACUAAUUUAUGUGGAAAUGAGUUAAUUUCCUUUGCCUGAAUUGUGUGAUUUUCUAGCGAUUUCAUCGCCACUGCCAU
...((.((((((((..((.((((((.((((((((......))))))...)).)))))))).))))))))..(((((...)))))....))... ( -21.50)
>consensus
AGCGCCGGAAAUCGGAACUAAUUUAUGUGGAAAUGAGUUAAUUUCCUUUGCCUGAAUUGUGUGAUUUUCUAGCGAUUUCAUCG___CUGCCAU
..(((.((((((((..((.((((((.((((((((......))))))...)).)))))))).))))))))..)))................... (-19.85 = -19.85 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:22 2006