Locus 7382

Sequence ID 2L_DroMel_CAF1
Location 20,543,419 – 20,543,510
Length 91
Max. P 0.530489
window11859

overview

Window 9

Location 20,543,419 – 20,543,510
Length 91
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 78.40
Mean single sequence MFE -19.18
Consensus MFE -12.10
Energy contribution -11.62
Covariance contribution -0.48
Combinations/Pair 1.19
Mean z-score -1.58
Structure conservation index 0.63
SVM decision value -0.01
SVM RNA-class probability 0.530489
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20543419 91 + 22407834
GAAUUUCGUGGCAUUUUUCGUUAGUUUAUGACAAAUGCGUUAGA--CUGCCACGCUGA----CCU-CCCUUCCUUCUUCCCCUACA--------CGACCCCCACCA-
.....(((((((((((.((((......)))).))))))(((((.--(......)))))----)..-..................))--------))).........- ( -18.80)
>DroSec_CAF1 64689 96 + 1
GAAUUUCGUGGCAUUUUUCGUUAGUUUAUGACAAAUGCGUUAGA--CUGCCACGCUGACUGACCUCCCCUUCCUUCGUCCCCUAUA--------CGACCCCCACCA-
.....(((((((((((.((((......)))).))))))(((((.--(.((...)).).))))).....................))--------))).........- ( -17.40)
>DroSim_CAF1 66020 97 + 1
GAAUUUCGUGGCAUUUUUCGUUAGUUUAUGACAAAUGCGUUAGA--CUGCCACGCUGACUGACCUCCCCUUCCUUCUUCCCCUACA--------CGACCCCCACCAC
.....(((((((((((.((((......)))).))))))(((((.--(.((...)).).))))).....................))--------))).......... ( -19.70)
>DroYak_CAF1 60693 92 + 1
GAAUUUCGUGGCAUUUUUCGUUAGUUUAUGACAAAUGCGUUAGA--CUGCCAUGCUGA----CCUCUCACUCAUCCUUCUCCCACA--------UGGCCCCCAACA-
..........((((((.((((......)))).))))))(((.(.--..((((((.((.----....................))))--------))))..).))).- ( -17.40)
>DroAna_CAF1 58751 103 + 1
GAAUUUCGUGGCAUUUUUCGUUAGUUUAUGACAAAUGCGUUAGAUGCUGUCGCGCUAUCCCGCCGCCA---CGCCUAUUCCAUACUAAAGCCCAUAUCCCAUAUCU-
((((..((((((((((.((((......)))).))))(((.(((.(((....))))))...))).))))---))...))))..........................- ( -22.60)
>consensus
GAAUUUCGUGGCAUUUUUCGUUAGUUUAUGACAAAUGCGUUAGA__CUGCCACGCUGAC___CCUCCCCUUCCUUCUUCCCCUACA________CGACCCCCACCA_
......((((((((((..(((..(((...)))....)))..)))...)))))))..................................................... (-12.10 = -11.62 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:21 2006