Locus 7380

Sequence ID 2L_DroMel_CAF1
Location 20,540,695 – 20,540,804
Length 109
Max. P 0.552231
window11856

overview

Window 6

Location 20,540,695 – 20,540,804
Length 109
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 88.75
Mean single sequence MFE -25.98
Consensus MFE -21.99
Energy contribution -22.27
Covariance contribution 0.28
Combinations/Pair 1.11
Mean z-score -1.59
Structure conservation index 0.85
SVM decision value 0.04
SVM RNA-class probability 0.552231
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20540695 109 - 22407834
UUGCCAUGAAGCAUUUGCGUAUCAUUACUCAAAAUUGCAUGUAAAAUUAAGUUGUUCUGCGCCCAGUAUCGCUUAAUUUUGUUGCUCAAGCCAGCA---------CUCUUGCCGUGGC
..((((((..((.((((.(((....))).))))...(((...((((((((((.((.(((....))).)).))))))))))..)))....))..(((---------....))))))))) ( -27.80)
>DroSec_CAF1 61978 109 - 1
UUGCCAUGAAGCAUUUGCUUAUCAUUACUCAAAAUUGCAUGUAAAAUUAAGUUGUUCUGCGCCCAGUAUCGCUUAAUUUUGUUGCUCAAGCCAGCA---------CUCUUGCCGUGGC
..((((((((((....))))................(((..(((((((((((.((.(((....))).)).))))))))))).((((......))))---------....))))))))) ( -26.80)
>DroSim_CAF1 63317 109 - 1
UUGCCAUGAAGCAUUUGCUUAUCAUUACUCAAAAUUGCAUGUAAAAUUAAGUUGUUCUGCGCCCAGUAUCGCUUAAUUUUGUUGCUCAAGCCAGCA---------CUCUUGCCGUGGC
..((((((((((....))))................(((..(((((((((((.((.(((....))).)).))))))))))).((((......))))---------....))))))))) ( -26.80)
>DroEre_CAF1 55200 106 - 1
UUGCCACGCAGCAUUUGCUUAUCAUUACUCAAAAUUGCAUGUAAAAUUAAGUUGUUCUUCGCCCAGUAUCGCUUAAUUUUGUUGCUCA-UCCACCG---------C--UUGCCGUGGC
..((((((((((.((((..((....))..))))...(((...((((((((((.((.((......)).)).))))))))))..)))...-......)---------)--.)).)))))) ( -24.50)
>DroYak_CAF1 57787 109 - 1
UUGCCAUGAAGCAUUUGCUUAUCAUUACUCAAAAUUGCAUGUAAAAUUAAGUUGUUCUGUGCCCAGUAUCGCUUAAUUUUGUUGCUCAAGCCACCG---------CUCUUGCCGUGGC
.....(((((((....)))..))))...........(((...((((((((((.((.(((....))).)).))))))))))..)))....(((((.(---------(....)).))))) ( -27.40)
>DroAna_CAF1 56210 118 - 1
UUGCCAUAAAGCAUUUGCUUAUUAUUCCUCAAAAUUGCAUCUAAAAUUAAGUUGUUCUGUACCCAGUAUCGCGUAAUGUUGUUGUUUCAACUGCCGUUGGUGUUGCUGUUGUUGUGGC
..((((((((((....))))...........................................(((((.(((.(((((..((((...))))...)))))))).)))))....)))))) ( -22.60)
>consensus
UUGCCAUGAAGCAUUUGCUUAUCAUUACUCAAAAUUGCAUGUAAAAUUAAGUUGUUCUGCGCCCAGUAUCGCUUAAUUUUGUUGCUCAAGCCACCA_________CUCUUGCCGUGGC
..((((((((((....))))................(((...((((((((((.((.(((....))).)).))))))))))..)))...........................)))))) (-21.99 = -22.27 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:19 2006