Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,126,041 – 2,126,154 |
Length | 113 |
Max. P | 0.731916 |
Location | 2,126,041 – 2,126,154 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.97 |
Mean single sequence MFE | -29.87 |
Consensus MFE | -23.60 |
Energy contribution | -24.20 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.64 |
Structure conservation index | 0.79 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.731916 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2126041 113 + 22407834 GUCGCAACAAUAGUGCCAAGUUGCU-----CGGAUCCAAGUUGGUUCCAUAAAUCGCAUA--CAAAUAGCCACAUGGGAGUGUUUGUAGCGUUCGAACAAAGCCACAAAAGCAAUGGCAA .............(((((..(((((-----.(((.((.....)).)))......(((.((--((((((.((.....))..)))))))))))..................)))))))))). ( -29.70) >DroSec_CAF1 126271 113 + 1 GUCGCAACAAUAGUGCCAAGUUGGU-----CGGAACCAAGUUGGUUCCAUAAAUCGCAUA--CAAAUAGCCACAUGGGAGUGUUUGUAUCGUUCGAACAAAGCCACAAAAGCAAUGGCAA .............(((((..(((.(-----(((((((.....))))))......((.(((--((((((.((.....))..)))))))))))...)).))).((.......))..))))). ( -30.40) >DroEre_CAF1 129062 113 + 1 GUCGCAACAAUAGUGCCAAGUUGGU-----CGGAACCAAGUCGGUUCCAUAAAUCGCAUA--CAAAUAGCCACAUGGGAGUGUUUGUAUCGUUCGAACAAAGCCACAAAAGCAAUGGCAA .............(((((..(((.(-----(((((((.....))))))......((.(((--((((((.((.....))..)))))))))))...)).))).((.......))..))))). ( -30.10) >DroYak_CAF1 131398 113 + 1 GUCGCAACAAUAGUGCCAAGUUGGU-----CGGAACCAAGGCGGUUCCAUAAAUCGCAUA--CAAAUAGCCACAUGGGAGUGUUUGUAUCGUUCGAACAAAGCCACAAAAGCAAUGGCAA .............(((((..(((((-----....)))))(((.((((.......((.(((--((((((.((.....))..)))))))))))...))))...)))..........))))). ( -30.20) >DroAna_CAF1 132227 120 + 1 GUUGCAACAAUGGUGGCAACUUGAAAGCAAUGGUACCAACUUGGUUCCAUAAAUCGCAUACCCAAAUAGCCACAUGGGAGUGUUUGAAUCGUUCGAACAAAGCCACAAAAUCAAUGGCAA .((((.......(((((.........((.((((.(((.....))).)))).....))...((((..........))))..(((((((.....)))))))..)))))..........)))) ( -28.93) >consensus GUCGCAACAAUAGUGCCAAGUUGGU_____CGGAACCAAGUUGGUUCCAUAAAUCGCAUA__CAAAUAGCCACAUGGGAGUGUUUGUAUCGUUCGAACAAAGCCACAAAAGCAAUGGCAA ...((..((((........))))........((((((.....)))))).......))...........((((..((((..((((((.......))))))...)).)).......)))).. (-23.60 = -24.20 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:27 2006