| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,536,439 – 20,536,550 |
| Length | 111 |
| Max. P | 0.950096 |
| Location | 20,536,439 – 20,536,550 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 93.19 |
| Mean single sequence MFE | -24.18 |
| Consensus MFE | -22.92 |
| Energy contribution | -22.60 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.95 |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.950096 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20536439 111 - 22407834 ACAAUUUGCAUAUCCUGCAAUGUUUUCCAAUGCA-----AUGCCCCCGCUCGACCCGCCUGAAUUCGAAUGAAAUAAUUAGAAUAAUAAUUGUUAUUUCGACCGGGCCACAGAAUU .......((((....((((.((.....)).))))-----)))).............(((((...(((((...((((((((......))))))))..))))).)))))......... ( -22.40) >DroSec_CAF1 57777 110 - 1 ACAAUUUGCAUAUCCUGCACUGUUUUCCAAUGUA-----AUGCC-CCGCUCGGCCCGCCUGAAUUCGAAUGAAAUAAUUAGAAUAAUAAUUGUUAUUUCGACCGGGCCACAGAAUU ......((((.....))))((((...........-----..(((-......)))..(((((...(((((...((((((((......))))))))..))))).))))).)))).... ( -25.00) >DroSim_CAF1 59096 111 - 1 ACAAUUUGCAUAUCCUGCAAUGUUUUCCAAUGUA-----AUGCCCCCGCUCGGCCCGCCUGAAUUCGAAUGAAAUAAUUAGAAUAAUAAUUGUUAUUUCGACCGGGCCACAGAAUU .......((((....((((.((.....)).))))-----))))........((((((.......(((((...((((((((......))))))))..))))).))))))........ ( -24.20) >DroEre_CAF1 50533 110 - 1 ACAAUUUGCAUAUUUUGCAAUGCUUUCCAAUGUA-----AUGCGC-CGCUCAGCCCGCCUGAAUUCGAAUGAAAUAAUUAGAAUAAUAAUUGUUAUUUCGAGCGGGCCACAGAAUU ....((((........(((.(((........)))-----.)))..-......((((((......(((((...((((((((......))))))))..)))))))))))..))))... ( -26.50) >DroYak_CAF1 53105 116 - 1 ACAAUUUGCAUAUUCUGCAAUGUUUUCCGAUGUAAUAUAAUGCGCCCGCUCUACCCGCCUGAAUUCGAAUGAAAUAAUUAGAAUAAUAAUUGUUAUUUCGACCGGGCCACAGAAUU .......((((((..((((.((.....)).))))..)).))))((((((.......))......(((((...((((((((......))))))))..)))))..))))......... ( -22.80) >consensus ACAAUUUGCAUAUCCUGCAAUGUUUUCCAAUGUA_____AUGCCCCCGCUCGGCCCGCCUGAAUUCGAAUGAAAUAAUUAGAAUAAUAAUUGUUAUUUCGACCGGGCCACAGAAUU .......((((....((((.((.....)).)))).....)))).............(((((...(((((...((((((((......))))))))..))))).)))))......... (-22.92 = -22.60 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:18 2006