Locus 7378

Sequence ID 2L_DroMel_CAF1
Location 20,534,249 – 20,534,347
Length 98
Max. P 0.702387
window11854

overview

Window 4

Location 20,534,249 – 20,534,347
Length 98
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 80.10
Mean single sequence MFE -26.74
Consensus MFE -19.30
Energy contribution -19.88
Covariance contribution 0.58
Combinations/Pair 1.10
Mean z-score -1.38
Structure conservation index 0.72
SVM decision value 0.36
SVM RNA-class probability 0.702387
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20534249 98 - 22407834
------CAGU-------UUCGAAGUGCUUGACUAAUGCAAUAAAACGCAGACAAUGUGUGAAGUUGAGCGUUCGAAUUUCCGAAUGCAUUUU-------CCAUUUUCCAAUGCACGGC
------....-------......(((((((...((((((((...(((((.....)))))...)))).(((((((......))))))).....-------.))))...))).))))... ( -26.10)
>DroSim_CAF1 56919 98 - 1
------CAGU-------UUCGAAGUGCUUGACUAAUGCAAUAAAACGCAGACAAUGUGUGAAGUUGAGCGUUCGAAUUUCCGAAUGCAUUUU-------CCAUUUUCCAAUGCACGGC
------....-------......(((((((...((((((((...(((((.....)))))...)))).(((((((......))))))).....-------.))))...))).))))... ( -26.10)
>DroEre_CAF1 48559 97 - 1
------CAGU-------UUCGGAGCGCUUGACUAAUGCAAUAAAACACAGACAAUGUGUGAAGUUGAGCGUUCGAGUUUCCGAAUGCAUU--------UCCAUUUUCCAAUGCACGGC
------....-------((((.((((((..(((...........(((((.....)))))..)))..))))))))))...(((..((((((--------..........))))))))). ( -26.62)
>DroYak_CAF1 50966 105 - 1
------CAGU-------UUCGAAGUGCUUGACUAAUGCAAUAAAACGCAGACAAUGUGUGAAGUUGAGCGUUCGAAUUUCCGAAUGCAUUUUCCAUUUUCCACUUUCCACUGCACGGC
------((((-------...((((((...((..((((((((...(((((.....)))))...)))).(((((((......)))))))......)))).))))))))..))))...... ( -25.30)
>DroAna_CAF1 49666 92 - 1
------CGGA-------AUCG-AGUCCUUCGCUAAUGCAAUAAAACGCAGACAAUGUGUGAAGUUGAGCGUUCGAAAAUCCGAAUGCAUUUU-------CCAUUUUU-----CACGAC
------.(((-------((((-(...((((((....))......(((((.....)))))))))))))(((((((......)))))))...))-------))......-----...... ( -24.70)
>DroPer_CAF1 99175 104 - 1
GCUGGGCGGGUGGGGGAGGGGGGGUGCCUGUCUAAUGCAAUAAAACGCAGACAAUGUGUGAAGCUGAGCGUUCGAAUUUCCGAAUGCAUUUU-------CC-------AAAGAGCCGC
....(((...(((..(((((.((....)).)))...((......(((((.....)))))...))...(((((((......))))))).))..-------))-------)....))).. ( -31.60)
>consensus
______CAGU_______UUCGAAGUGCUUGACUAAUGCAAUAAAACGCAGACAAUGUGUGAAGUUGAGCGUUCGAAUUUCCGAAUGCAUUUU_______CCAUUUUCCAAUGCACGGC
.......................((((..........((((...(((((.....)))))...)))).(((((((......)))))))........................))))... (-19.30 = -19.88 +   0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:17 2006