| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,534,075 – 20,534,180 |
| Length | 105 |
| Max. P | 0.586659 |
| Location | 20,534,075 – 20,534,180 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 76.89 |
| Mean single sequence MFE | -36.77 |
| Consensus MFE | -21.32 |
| Energy contribution | -21.40 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.586659 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20534075 105 - 22407834 -CCCCCUCGUGGGCGUGGCUGCGUGUAUAAUUUGCGAUUUAUGUGAGCCAUGCUGACAGCAGUCGCGGCGUUGUGGGAAAGCGG-AGCAGG-GGGAAUGCGGG--------GAACU -.((((..((.((((((((((((((.((........)).))))).))))))))).)).(((.((.(.((.((((......))))-.))...-).)).))))))--------).... ( -40.20) >DroSec_CAF1 55424 106 - 1 -GCCCCUCGUGGGCGUGGCUGCGUGUAUAAUUUGCGAUUUAUGUGAGCCAUGCUGACAGCAGUCGCGGAGUUGUGGGAAAGCGUGAAAGGC-GGGAAAGCGGG--------GAAAU -.((((..((.((((((((((((((.((........)).))))).))))))))).)).((..((.((...(..((......))..)....)-).))..)))))--------).... ( -38.40) >DroSim_CAF1 56745 106 - 1 -CCCCCUCGUGGGCGUGGCUGCGUGUAUAAUUUGCGAUUUAUGUGAGCCAUGCUGACAGCAGUCGCGGAGUUGUGGGAAAGCGUGAAAGGG-GGGAAGGCGGG--------GAAAU -.((((((((.((((((((((((((.((........)).))))).))))))))).)).((..((.((......)).))..))......)))-)))........--------..... ( -38.80) >DroEre_CAF1 48393 115 - 1 -CCCCUUCGUGGGCGUGGCUGCGUGUAUAAUUUGCGAUUUAUGUGAGCUAUGCUGACAGCAGUCGCGGAGUUGUGGGUAGCCGGAAAAGGCGGGAAAAGCGGGAAAAGCGGGUAAA -.((((((((.....(((((((.(..(...(((((((((..(((.(((...))).)))..)))))))))..)..).)))))))......)))))....((.......))))).... ( -37.30) >DroYak_CAF1 50816 99 - 1 -CCCCUUCGCGGGCGUGGCUGCGUGUAUAAUUUGCGAUUUAUGUGAGCCAUGCUGACAGCAGUCGAGGAAUUGUGGGUAGCCGG--------GGGGAAGCGGG--------GCUUU -(((((((.(...(.(((((((...((((((((.(((((..(((.(((...))).)))..)))))..)))))))).))))))).--------)).)))).)))--------..... ( -37.40) >DroAna_CAF1 49482 90 - 1 CGAUGUGUGUGGGCGUGGCUGCGUGGAUAAUUUGCGAUUUAUGUGAGCUAUGUUGACAGCACAAGAAG------GGGCGGC------------CGAUGGUGGG--------GAAAU ...(((((((.(((((((((((((((((........)))))))).))))))))).))).)))).....------...(.((------------(...))).).--------..... ( -28.50) >consensus _CCCCCUCGUGGGCGUGGCUGCGUGUAUAAUUUGCGAUUUAUGUGAGCCAUGCUGACAGCAGUCGCGGAGUUGUGGGAAACCGG_AAAGG__GGGAAAGCGGG________GAAAU ...(((.(((.((((((((((((((.((........)).))))).))))))))).)).((....))......).)))....................................... (-21.32 = -21.40 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:16 2006