Locus 7376

Sequence ID 2L_DroMel_CAF1
Location 20,533,380 – 20,533,480
Length 100
Max. P 0.995829
window11852

overview

Window 2

Location 20,533,380 – 20,533,480
Length 100
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 90.27
Mean single sequence MFE -27.32
Consensus MFE -24.33
Energy contribution -24.25
Covariance contribution -0.08
Combinations/Pair 1.26
Mean z-score -2.78
Structure conservation index 0.89
SVM decision value 2.62
SVM RNA-class probability 0.995829
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20533380 100 - 22407834
GCCUUGUGCGUUCCAAAUGAAUCUUAAAUUACCAGCACAUCCCGCUGUCAAUUGUAUUGCUGCUGAUCGGAAACAAACCAAUCAUGGCACGCACAGGCAA
((((.((((((.(((..(((............(((((((....((........))..)).)))))...(....).......)))))).)))))))))).. ( -30.70)
>DroSec_CAF1 54756 100 - 1
GCCUUGUGCGUUCCAAAUGAAUCUUAAAUUACCAGCACAUCCCGCUGUCAAUUGUAUUGCUGCUGAUCGGAAACAAACCAAUCAUGGCACGCACAGGCAA
((((.((((((.(((..(((............(((((((....((........))..)).)))))...(....).......)))))).)))))))))).. ( -30.70)
>DroSim_CAF1 56077 100 - 1
GCCUUGUGCGUUCCAAAUGAAUCUUAAAUUACCAGCACAUCCCGCUGUCAAUUGUAUUGCUGCUGAUCGGAAACAAACCAAUCAUGGCACGCACAGGCAA
((((.((((((.(((..(((............(((((((....((........))..)).)))))...(....).......)))))).)))))))))).. ( -30.70)
>DroEre_CAF1 47712 100 - 1
GCCCUGUGCCUUCCAAAUGAAUCUUAAAUUACCAGCACAUCCCGCUGUCAAUUGUAGUGCUGUUGAUCGGAUACAAACCCAUCAUGGCACGCACAAGCAA
((..(((((.................((((..((((.......))))..))))...(((((((.(((.((........))))))))))))))))).)).. ( -26.70)
>DroYak_CAF1 50063 100 - 1
GUCUUGUGCGUUCCAAAUGAAUCUUAAAUUACCAGCACAUCCCGCUGUCGAUUGUAUUACUUCUGAUCGGAAUCAAACCCGUCAUGGCACGCACAAGCAA
(.(((((((((.(((...........((((..((((.......))))..))))..........(((.(((........))))))))).)))))))))).. ( -29.80)
>DroAna_CAF1 47210 99 - 1
GUUCUGUGU-UUUCAAAUGAAUCUUAAAUUAACAAAAUAUCCCGCUGUCAAUUGUUGUAUGUCUGAUCGGAAACAAACCAAUCAUGGCGCGCACAAGCAA
(((.(((((-.(((....)))......................((.((((((((((((...(((....))).))))..))))..)))))))))))))).. ( -15.30)
>consensus
GCCUUGUGCGUUCCAAAUGAAUCUUAAAUUACCAGCACAUCCCGCUGUCAAUUGUAUUGCUGCUGAUCGGAAACAAACCAAUCAUGGCACGCACAAGCAA
(((.(((((((.(((...........((((..((((.......))))..))))..........((((.((.......)).))))))).)))))))))).. (-24.33 = -24.25 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:15 2006