Locus 7375

Sequence ID 2L_DroMel_CAF1
Location 20,532,391 – 20,532,492
Length 101
Max. P 0.551132
window11851

overview

Window 1

Location 20,532,391 – 20,532,492
Length 101
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 84.84
Mean single sequence MFE -37.00
Consensus MFE -25.84
Energy contribution -27.40
Covariance contribution 1.56
Combinations/Pair 1.14
Mean z-score -2.42
Structure conservation index 0.70
SVM decision value 0.03
SVM RNA-class probability 0.551132
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20532391 101 + 22407834
GCAUCGCUUGCCAAAAUCCGCAUUAAAUUUAUGCACUUUUGUUGUUACGGGCAAACGUAGCC-----GGAAUGUCCGUAUACGGAU--------------GCGGGCUGGGCAUGCGAGCC
((.((((.((((....(((((((.......)))).........((((((......)))))).-----)))..((((((((....))--------------))))))..)))).)))))). ( -40.00)
>DroSec_CAF1 53757 101 + 1
GCAUCGCUUGCCAAAAUCCGCAUUAAAUUUAUGCACUUUUGUUGUUACGGGCAAACGUAGCC-----GGAAUGUCCGUAUACGGAU--------------GCGGGCUGGGCAUGCGAGCC
((.((((.((((....(((((((.......)))).........((((((......)))))).-----)))..((((((((....))--------------))))))..)))).)))))). ( -40.00)
>DroSim_CAF1 55078 101 + 1
GCAUCGCUUGCCAAAAUCCGCAUUAAAUUUAUGCACUUUUGUUGUUACGGGCAAACGUAGCC-----GGAAUGUCCGUAUACGGAU--------------GCGGGCUGGGCAUGCGAGCC
((.((((.((((....(((((((.......)))).........((((((......)))))).-----)))..((((((((....))--------------))))))..)))).)))))). ( -40.00)
>DroEre_CAF1 46771 115 + 1
GCAUCGCUUGCCAAAAUGCGCAUUAAAUUUAUGCACUUUUGUUGUUACGGGCGAACGUAGCC-----GGAAUGCCGGUUUACGGAUACGGGAUACGGGAUACGGGCUGGGCAUGCGAGCC
((.((((.((((....(((((((.......))))....((((....)))))))....(((((-----.(.((.(((..(..((....))..)..))).)).).))))))))).)))))). ( -39.00)
>DroYak_CAF1 49098 106 + 1
GCAUCGUUUGCCAAAAUCCGCAUUAAAUUUAUGCACUUUUGUUGUUACGGGCAAACGUAGCCGGGCCGGAAUGUCCGUAUACGGAU--------------GCGGGCUGGGCAUGCGAGCA
((.(((((((((.......((((.......)))).....(((....))))))))))((((((.((((.(...(((((....)))))--------------.).)))).))).))))))). ( -43.10)
>DroAna_CAF1 46293 85 + 1
GCAUCGUUUGCCAAAAUCCGCAUUAAAUUUAUGCACUUUUGUUGUUACGGCAAAACGUAGUU-----GAAAUGUCCGU--ACGGAU--------------ACGGGC--------------
.((.((((((((.......((((.......))))......((....))))).)))))....)-----)....((((((--(....)--------------))))))-------------- ( -19.90)
>consensus
GCAUCGCUUGCCAAAAUCCGCAUUAAAUUUAUGCACUUUUGUUGUUACGGGCAAACGUAGCC_____GGAAUGUCCGUAUACGGAU______________GCGGGCUGGGCAUGCGAGCC
((.((((.((((....(((((((.......)))).........((((((......))))))......)))..((((((......................))))))..)))).)))))). (-25.84 = -27.40 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:14 2006