| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,531,074 – 20,531,183 |
| Length | 109 |
| Max. P | 0.998440 |
| Location | 20,531,074 – 20,531,183 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.42 |
| Mean single sequence MFE | -17.82 |
| Consensus MFE | -2.44 |
| Energy contribution | -2.44 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.44 |
| Mean z-score | -3.07 |
| Structure conservation index | 0.14 |
| SVM decision value | 3.10 |
| SVM RNA-class probability | 0.998440 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20531074 109 - 22407834 AUCCAAAUC-CAGG-AUCCACUUUCUGGGUAUGAAAUU-CAACUCGUAUUUGAUCCUA------CAAAAAGGGCAAAUACUAAAAAAAAAACAAUAAUCACC--UUUACAACAUUAUCUA ...((.(((-((((-(......)))))))).)).....-......(((((((.((((.------.....)))))))))))......................--................ ( -21.40) >DroSec_CAF1 52310 110 - 1 AACCAAAUCCCAGG-AUCCACUUUCUAGGUAUGAAAUCCCAACUCAUAUUUGAUCCUA------CAAAAAGGGUAAAAAUUGAC---AAAACAAUAAUCACCUCUUUACCACAUUAUCUA ...........(((-(((........((((((((.........)))))))))))))).------...(((((((....((((..---....))))....))).))))............. ( -15.60) >DroSim_CAF1 53641 108 - 1 AACCAAAUC-CAGG-AUCCACUUUCUGGGUUUGAAAUC-CAACUCAUAUUUGAUCCUA------CAAAAAGGGUACAAAUUGAC---AAAACAAUAAUCACCUCUUUACCACAUUAUCUC ...((((((-((((-(......))))))))))).....-....(((.((((((((((.------.....))))).)))))))).---................................. ( -22.90) >DroEre_CAF1 45491 93 - 1 ---------------AUCCCCUCUUUAGGCAUGAAAUC-CAGCUCAUAUUAGAGCCUA------CAAAAGGGGCAAAGGCUGGC---AAAACAAUAAUCACC--UUUAUCACAUUAUCCA ---------------..(((((.(((((((((((....-....))))......)))))------.)).))))).(((((.(((.---..........)))))--)))............. ( -17.70) >DroYak_CAF1 47563 113 - 1 UACCAAAUA-CAGAACUCCACUCUUUAAGUAUGAAAUA-CAACUCAUGUUUGAUAUCAUGAUAUCAUAUUUGAUAAAAGCUGAC---AAAACAAGAAUCACC--UUUAUCACAUUAUCUA .........-.(((............((((((((....-....(((((........)))))..))))))))((((((.(.(((.---..........)))).--))))))......))). ( -11.50) >consensus AACCAAAUC_CAGG_AUCCACUUUCUAGGUAUGAAAUC_CAACUCAUAUUUGAUCCUA______CAAAAAGGGUAAAAACUGAC___AAAACAAUAAUCACC__UUUACCACAUUAUCUA .........................(((((((((.........))))))))).................................................................... ( -2.44 = -2.44 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:09 2006