Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,125,322 – 2,125,512 |
Length | 190 |
Max. P | 0.971883 |
Location | 2,125,322 – 2,125,432 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.16 |
Mean single sequence MFE | -28.55 |
Consensus MFE | -19.46 |
Energy contribution | -20.52 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.03 |
Mean z-score | -1.79 |
Structure conservation index | 0.68 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.691193 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2125322 110 - 22407834 GCCAGAAUAAAUUACAUGAAAUUUAUUUUGGCUGCUAUUGCUUCGAAUGAAAAUGAUGUGGAAACUGGCCGCACUGU----UGCAAUAUGUUUUUUCCAA------GUAUAGGAUGUUGC (((((((((((((......))))))))))))).(((((((((((....)))(((..(((((.......)))))..))----))))))).))....(((..------.....)))...... ( -27.40) >DroSec_CAF1 125583 114 - 1 GCCAGAAUAAAUUGCAUAAAAUUUAUUUUGGCUGCUAUUGCUUCGAAUGAAAAUGAUGUGCAAACUGGCCGCACUGUUGGUUGCAAUACGUUUUUUCCAA------GUAUAGGAUGUUGC (((((((((((((......)))))))))))))..((((.((((.((..(((((((...(((((.(..((......))..))))))...))))))))).))------))))))........ ( -34.70) >DroEre_CAF1 128410 115 - 1 GCCAGAAUAAAUUACAUAACAUUUAUUUUGGCUGCUAUUGCUUUGGAUGAAAAUGAUGUGGAAACUAGCCGCACUA-----UGCAAUAUGUUUUUUCCAUUUCCAAGUAAAGGAUGCACC ((((((((((((........))))))))))))(((((((((..(((((....))..(((((.......))))))))-----.)))))).............(((.......))).))).. ( -27.50) >DroYak_CAF1 130755 115 - 1 GCCAGCAUAAAUUGCAUAACAUUUAUUUUAGCUGCUAUUGCUUUGGAUGAAAAUGAUGUGGAAACUAGCCGCACUA-----UGCAAUAUGUUUUUUUCAAGUAUAGGGAUAGGAUGUUGC ..((((((..((((((((.((((((....(((.......))).)))))).......(((((.......))))).))-----)))))).(((((((.........)))))))..)))))). ( -24.60) >consensus GCCAGAAUAAAUUACAUAAAAUUUAUUUUGGCUGCUAUUGCUUCGAAUGAAAAUGAUGUGGAAACUAGCCGCACUA_____UGCAAUAUGUUUUUUCCAA______GUAUAGGAUGUUGC (((((((((((((......))))))))))))).((((((((.....((....))..(((((.......))))).........)))))).))....(((.............)))...... (-19.46 = -20.52 + 1.06)
Location | 2,125,355 – 2,125,472 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.42 |
Mean single sequence MFE | -28.35 |
Consensus MFE | -24.83 |
Energy contribution | -25.20 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.11 |
Mean z-score | -2.21 |
Structure conservation index | 0.88 |
SVM decision value | 1.56 |
SVM RNA-class probability | 0.964173 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2125355 117 - 22407834 GCCGCAAAAAUUUACAUAUUCAAGUAAAAAGUUUGCAGAAGCCAGAAUAAAUUACAUGAAAUUUAUUUUGGCUGCUAUUGCUUCGAAUGAAAAUGAUGUGGAAACUGGCCGCACUGU--- ((.(((((..(((((........)))))...)))))((.((((((((((((((......)))))))))))))).))...))...............(((((.......)))))....--- ( -30.20) >DroSec_CAF1 125617 120 - 1 GCCGCAAAAAUUUACAUAUUCAAGUAAAAAGUUUGCAGAAGCCAGAAUAAAUUGCAUAAAAUUUAUUUUGGCUGCUAUUGCUUCGAAUGAAAAUGAUGUGCAAACUGGCCGCACUGUUGG ((.((.....(((((........))))).((((((((.(((((((((((((((......))))))))))))))((....))...............).)))))))).)).))........ ( -35.00) >DroEre_CAF1 128449 116 - 1 GCCACAAGAAUUUGCAUAUUCAAGUAAAAAGUUUGCAGAAGCCAGAAUAAAUUACAUAACAUUUAUUUUGGCUGCUAUUGCUUUGGAUGAAAAUGAUGUGGAAACUAGCCGCACUA---- .(((((...((((...(((((((((((...(....)((.(((((((((((((........))))))))))))).)).)))).))))))).))))..)))))...............---- ( -28.40) >DroYak_CAF1 130794 116 - 1 GCCAUAGAAAUUUACAUAUUCGAGUAAAAAGUUUGCAGAAGCCAGCAUAAAUUGCAUAACAUUUAUUUUAGCUGCUAUUGCUUUGGAUGAAAAUGAUGUGGAAACUAGCCGCACUA---- .(((......(((((........)))))......((((.(((.(((((((((........))))))....)))))).))))..)))..........(((((.......)))))...---- ( -19.80) >consensus GCCACAAAAAUUUACAUAUUCAAGUAAAAAGUUUGCAGAAGCCAGAAUAAAUUACAUAAAAUUUAUUUUGGCUGCUAUUGCUUCGAAUGAAAAUGAUGUGGAAACUAGCCGCACUA____ .(((((...((((...(((((((((((...(....)((.((((((((((((((......)))))))))))))).)).)))))).))))).))))..)))))................... (-24.83 = -25.20 + 0.37)
Location | 2,125,392 – 2,125,512 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -25.15 |
Consensus MFE | -22.04 |
Energy contribution | -21.98 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.18 |
Mean z-score | -2.51 |
Structure conservation index | 0.88 |
SVM decision value | 1.68 |
SVM RNA-class probability | 0.971883 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2125392 120 + 22407834 CAAUAGCAGCCAAAAUAAAUUUCAUGUAAUUUAUUCUGGCUUCUGCAAACUUUUUACUUGAAUAUGUAAAUUUUUGCGGCAAACAAUGUGUAGAAAUUUGUAUAAAUUAAAAAUGCAAAC ....((.(((((.((((((((......)))))))).))))).))(((...((((((.((...((((((((((((((((.((.....)))))))))))))))))))).))))))))).... ( -26.10) >DroSec_CAF1 125657 120 + 1 CAAUAGCAGCCAAAAUAAAUUUUAUGCAAUUUAUUCUGGCUUCUGCAAACUUUUUACUUGAAUAUGUAAAUUUUUGCGGCAAACAAUUUGCAGGAAUUUGUAUAAAUUAAAAAUGCAAAC ....((.(((((.((((((((......)))))))).))))).))(((...((((((.((...(((((((((((((((((........))))))))))))))))))).))))))))).... ( -26.60) >DroEre_CAF1 128485 120 + 1 CAAUAGCAGCCAAAAUAAAUGUUAUGUAAUUUAUUCUGGCUUCUGCAAACUUUUUACUUGAAUAUGCAAAUUCUUGUGGCAAACAAUGUGCAGAAAUUUGUAUAAAUUAAAAAUGCAAAC .....(((((((.(((((((........))))))).))))(((((((...(((((((..((((......))))..)))).))).....)))))))..................))).... ( -26.60) >DroYak_CAF1 130830 120 + 1 CAAUAGCAGCUAAAAUAAAUGUUAUGCAAUUUAUGCUGGCUUCUGCAAACUUUUUACUCGAAUAUGUAAAUUUCUAUGGCAAACAAUGUGCAGAAAUUUGUAUAAAUUAAAAAUGGAAAC ..((((((...........))))))..(((((((((..(.(((((((.....(((((........)))))......((.....))...))))))).)..)))))))))............ ( -21.30) >consensus CAAUAGCAGCCAAAAUAAAUGUUAUGCAAUUUAUUCUGGCUUCUGCAAACUUUUUACUUGAAUAUGUAAAUUUUUGCGGCAAACAAUGUGCAGAAAUUUGUAUAAAUUAAAAAUGCAAAC ...(((.(((((.(((((((........))))))).))))).))).................((((((((((((((((.((.....))))))))))))))))))................ (-22.04 = -21.98 + -0.06)
Location | 2,125,392 – 2,125,512 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -25.32 |
Consensus MFE | -20.69 |
Energy contribution | -21.62 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.12 |
Mean z-score | -2.34 |
Structure conservation index | 0.82 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.885956 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2125392 120 - 22407834 GUUUGCAUUUUUAAUUUAUACAAAUUUCUACACAUUGUUUGCCGCAAAAAUUUACAUAUUCAAGUAAAAAGUUUGCAGAAGCCAGAAUAAAUUACAUGAAAUUUAUUUUGGCUGCUAUUG ....((..............(((((...........)))))..(((((..(((((........)))))...)))))...((((((((((((((......))))))))))))))))..... ( -25.10) >DroSec_CAF1 125657 120 - 1 GUUUGCAUUUUUAAUUUAUACAAAUUCCUGCAAAUUGUUUGCCGCAAAAAUUUACAUAUUCAAGUAAAAAGUUUGCAGAAGCCAGAAUAAAUUGCAUAAAAUUUAUUUUGGCUGCUAUUG ....((.....................(((((((((.(((((.....................))))).))))))))).((((((((((((((......))))))))))))))))..... ( -30.30) >DroEre_CAF1 128485 120 - 1 GUUUGCAUUUUUAAUUUAUACAAAUUUCUGCACAUUGUUUGCCACAAGAAUUUGCAUAUUCAAGUAAAAAGUUUGCAGAAGCCAGAAUAAAUUACAUAACAUUUAUUUUGGCUGCUAUUG ....(((..................(((((((.(((.(((((.....((((......))))..))))).))).)))))))((((((((((((........)))))))))))))))..... ( -28.60) >DroYak_CAF1 130830 120 - 1 GUUUCCAUUUUUAAUUUAUACAAAUUUCUGCACAUUGUUUGCCAUAGAAAUUUACAUAUUCGAGUAAAAAGUUUGCAGAAGCCAGCAUAAAUUGCAUAACAUUUAUUUUAGCUGCUAUUG ..........................((((((.(((.(((((....(((.........)))..))))).))).))))))(((.(((((((((........))))))....)))))).... ( -17.30) >consensus GUUUGCAUUUUUAAUUUAUACAAAUUUCUGCACAUUGUUUGCCACAAAAAUUUACAUAUUCAAGUAAAAAGUUUGCAGAAGCCAGAAUAAAUUACAUAAAAUUUAUUUUGGCUGCUAUUG ....(((..................(((((((..((((.....))))...(((((........))))).....)))))))(((((((((((((......))))))))))))))))..... (-20.69 = -21.62 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:26 2006