| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,523,737 – 20,523,829 |
| Length | 92 |
| Max. P | 0.995917 |
| Location | 20,523,737 – 20,523,829 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 75.90 |
| Mean single sequence MFE | -8.71 |
| Consensus MFE | -8.90 |
| Energy contribution | -8.45 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.08 |
| Mean z-score | 0.60 |
| Structure conservation index | 1.02 |
| SVM decision value | 2.63 |
| SVM RNA-class probability | 0.995917 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20523737 92 - 22407834 GUAUUUACAUUUACUCUUUCAUCUAUUCGAUGCAUUUCUCUGACAUU----UAUGGCCCUUACUGCAACUGACGCUGACUUUCGGCACCCACUCCU (((........)))........((((..((((((......)).))))----.)))).................((((.....)))).......... ( -8.20) >DroSec_CAF1 45190 76 - 1 --------------------AUCUUUUCGAUGCAUCUCUCCGACAUUUAUUUAUGACCCUUGCUGCAACUGACGCUGACUUUCGGCACCCACUGCU --------------------..........((((.(.......(((......)))......).))))......((((.....)))).......... ( -8.52) >DroSim_CAF1 46106 86 - 1 GUAUUUACUUUUA------CAUUUAUUUGAUGCAUCUCUCUGACAUU----UAUGACCCUUGCUGCAACUGACGCUGACCUUCGGCACCCACUGCU (((........))------)..((((..((((((......)).))))----.))))........(((......((((.....))))......))). ( -9.40) >consensus GUAUUUAC_UUUA______CAUCUAUUCGAUGCAUCUCUCUGACAUU____UAUGACCCUUGCUGCAACUGACGCUGACUUUCGGCACCCACUGCU ..............................((((.(.......(((......)))......).))))......((((.....)))).......... ( -8.90 = -8.45 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:57 2006