Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,512,389 – 20,512,496 |
Length | 107 |
Max. P | 0.969342 |
Location | 20,512,389 – 20,512,496 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.89 |
Mean single sequence MFE | -25.05 |
Consensus MFE | -9.63 |
Energy contribution | -9.63 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.56 |
Structure conservation index | 0.38 |
SVM decision value | 1.64 |
SVM RNA-class probability | 0.969342 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20512389 107 + 22407834 ACCGUC----------GACUUCUC--GCACGGCACACACUUCACGCUGGGCAUGCAAAAUGCACGUCUAAUACAAUGCAAAAUGCAAAACGCCGG-GAAACCAACACACAACAAGGAGAC .(((((----------((....))--).))))......((((..(((((((.(((.....))).)))))......(((.....)))....)).((-....))............)))).. ( -27.50) >DroPse_CAF1 68452 113 + 1 NNNNNNNNNNNNNNNNNAUGCCUUAUGUGGAACACACACUUCACGCUGGGCAUGCAAAAUGCAAGUGGAAUACAAUGCAAAAUGCAAAACGCC----AACCCAAAAAAAA---AGGGGGA ..................(((((..((((((........))))))..)))))((((...((((..((.....)).))))...)))).......----..(((........---.)))... ( -24.70) >DroEre_CAF1 27977 107 + 1 ACCGCC----------GACUUCUC--GCACGGCACACACUUCACGCUGGGCAUGCAAAAUGCACGUCUAAUACAAUGCAAAAUGCAAAACGCCGG-GAAACCAACACACAACAAGGAGAC ...(((----------(.......--...)))).....((((..(((((((.(((.....))).)))))......(((.....)))....)).((-....))............)))).. ( -26.40) >DroYak_CAF1 29079 107 + 1 ACCGUC----------GACUUCUC--GCACGGCACACACUUCACGCUGGGCAUGCAAAAUGCACGUCUAAUACAAUGCAAAAUGCAAAACGCCGG-GAAACCAACACACGACAAGGGCGC ..((((----------..(((.((--(...(((.............(((((.(((.....))).)))))......(((.....)))....)))((-....))......))).))))))). ( -28.30) >DroAna_CAF1 21836 106 + 1 CCUGUC----------GACUUCUC----ACGUUGCACACUUCACGCUGGGCAUGCAAAAUGCACGUCUAAUACAAUGCAAAAUGCAAAACGCCAAACAAACCAACCCAGAACAAGCUGGC ..((((----------(((.....----..)))).)))......(((((((.(((.....))).)))))......(((.....)))....)).............((((......)))). ( -19.30) >DroPer_CAF1 74469 107 + 1 UCCACCCCCCUCCCCUCAUGCCUCAUGUGGAACACACACUUCACGCUGGGCAUGCAAAAUGCAAGUGGAAUACAAUGCAAAAUGCAAAACGCC----AACCCAAACCAAA---------A (((((...........(((((((..((((((........))))))..)))))))..........)))))......(((.....))).......----.............---------. ( -24.10) >consensus ACCGUC__________GACUUCUC__GCACGGCACACACUUCACGCUGGGCAUGCAAAAUGCACGUCUAAUACAAUGCAAAAUGCAAAACGCCGG_GAAACCAACACACAACAAGGAGGC ................................................(((.(((.....)))............(((.....)))....)))........................... ( -9.63 = -9.63 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:49 2006