Locus 7361

Sequence ID 2L_DroMel_CAF1
Location 20,506,945 – 20,507,043
Length 98
Max. P 0.793983
window11819

overview

Window 9

Location 20,506,945 – 20,507,043
Length 98
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 80.54
Mean single sequence MFE -29.56
Consensus MFE -16.96
Energy contribution -16.88
Covariance contribution -0.08
Combinations/Pair 1.26
Mean z-score -2.09
Structure conservation index 0.57
SVM decision value 0.60
SVM RNA-class probability 0.793983
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20506945 98 - 22407834
AGCCAGUGACACAGUCCUGGCUCAUUUCAAAGGCUUCCCUU----CCCCUCCAUCGACUGGG-----AAACAUCCCU---CCCGGGCGGCUGUUUACGCACAUUUGUCUU
((((((.(((...))))))))).......(((((.......----............(((((-----(........)---)))))(((........)))......))))) ( -27.90)
>DroSec_CAF1 23975 101 - 1
AGCCAGUGACACAGUCCUGGCUCAUUUCAAAGGCAUCCCUU----CUCCUCCGUCGGAUGGG-----AAACAUCCCUCCUCCGGGGCGGCUGUUUACGCACAUUUGUCUU
((((((.(((...))))))))).......((((((......----....((((..(((.(((-----(....)))))))..))))(((........))).....)))))) ( -35.00)
>DroSim_CAF1 29074 101 - 1
AGCCAGUGACACAGUCCUGGCUCAUUUCAAAGGCAUCCCUU----CCCCUCCGUCGGAUGGG-----AAACAUCCCUCCUCCCGGGCGGCUGUUUACGCACAUUUGUCUU
((((((.(((...))))))))).......((((((......----.....(((..(((.(((-----(....)))))))...)))(((........))).....)))))) ( -32.40)
>DroYak_CAF1 22811 94 - 1
AGCCAGUGACACAGUCCUGGCUCAUUUCAAAGGCUU----U----CCCUUCCGUCGAAUGGG-----AAACACCCCU---CCCGGGUGGCUGUUUACGCACAUUUGUCUU
((((((.(((...))))))))).....((((.((((----(----((((((....))).)))-----)))(((((..---...))))).........))...)))).... ( -30.50)
>DroAna_CAF1 15106 108 - 1
AGCCAGUGGCACAGUCCUGGCCCGUUCCA--GGCUCAUUUUGAAGCACCCCCCUCAAAAAAUAAGCCAACCCACCCACCUCCAGAGCGACUGUUUACGCACAUUUGUCUU
.((.((((((((((((((((......)))--)((((.((((((.(......).)))))).....(......)...........))))))))))....)).)))).))... ( -22.00)
>consensus
AGCCAGUGACACAGUCCUGGCUCAUUUCAAAGGCUUCCCUU____CCCCUCCGUCGAAUGGG_____AAACAUCCCUCCUCCCGGGCGGCUGUUUACGCACAUUUGUCUU
.(((((.(((...))))))))........(((((............(((..........))).......................(((........)))......))))) (-16.96 = -16.88 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:46 2006