Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,124,524 – 2,124,702 |
Length | 178 |
Max. P | 0.834668 |
Location | 2,124,524 – 2,124,625 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 84.52 |
Mean single sequence MFE | -24.85 |
Consensus MFE | -16.12 |
Energy contribution | -17.40 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.07 |
Mean z-score | -1.80 |
Structure conservation index | 0.65 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.545398 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2124524 101 + 22407834 AAAUUGAUUUGUUUCACUGCUUU------------UUUGCACACCAAAAGCCGCUUAGCAAAUUGAAUGCACAUUGUGAGUUUGUGCAUCUGAUAGGAGCUCACAAAAAAAUA ...(..(((((((...(.(((((------------(.........)))))).)...)))))))..).......((((((((((.(((....).)).))))))))))....... ( -24.20) >DroSec_CAF1 124810 99 + 1 AAAUUGAUUUGUUUCGCUGCUUU------------UU-GCACACCUAAAGCCGCUUAGCAAAUUGAAUGCACAUUGUGAGUUUGUGCAUCUGAUAGGAGCUCACAAAAAA-CA ...(..(((((((..((.(((((------------..-........))))).))..)))))))..).......((((((((((.(((....).)).))))))))))....-.. ( -28.10) >DroSim_CAF1 124588 100 + 1 AAAUUGAUUUGUUUCGCUGCUUU------------UUCGCACACCUAAAGCCGCUUAGCAAAUUGAAUGCACUUUGUGAGUUUGUGCAUCUGAUAGGAGCUCNNNNNNNN-NN ...(..(((((((..((.(((((------------...........))))).))..)))))))..)((((((...........)))))).....................-.. ( -21.10) >DroEre_CAF1 127615 111 + 1 AAAUUGAUUUGUUUCACUGCUUUUG-UUUUUUUUUUUUGCACACCUAAAGCCGCUUAGCAAAUUGAAUGCACAUUGUGCGUUUGUGCAUCUGAUAAGAGCUGACAAAAAA-UA .......((((((.....(((((((-((.........(((((.......((......)).....((((((((...)))))))))))))...))))))))).))))))...-.. ( -26.20) >DroYak_CAF1 129936 112 + 1 AAAUUGAUUUGUUUCACUGUUUUGGGUUUUUUUUGUUUGCACACCUAAAGCCGCUUAGCAAAUUGAAUGCACAUUGUGAGCUGGUGCAUCUGAUAAGAGCUGACAAAAAA-UA ...(..(((((((...(.(((((((((...............))))))))).)...)))))))..).......((((.((((..(((....).))..)))).))))....-.. ( -24.66) >consensus AAAUUGAUUUGUUUCACUGCUUU____________UUUGCACACCUAAAGCCGCUUAGCAAAUUGAAUGCACAUUGUGAGUUUGUGCAUCUGAUAGGAGCUCACAAAAAA_UA ...(..(((((((...(.(((((.......................))))).)...)))))))..).......((((((((((.(((....).)).))))))))))....... (-16.12 = -17.40 + 1.28)
Location | 2,124,585 – 2,124,702 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 86.24 |
Mean single sequence MFE | -25.10 |
Consensus MFE | -19.83 |
Energy contribution | -19.95 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.14 |
Mean z-score | -1.88 |
Structure conservation index | 0.79 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.834668 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2124585 117 + 22407834 UUGUGAGUUUGUGCAUCUGAUAGGAGCUCACAAAAAAAUAAACCC--UAAAAACAAUAAAACAUGACUAUAUCGCCGAAAGGUUGCAGGACUCACAGGGUGCAAACAGCCAGGAUAACA .(((((((((.((((...((((..((.(((...............--................))))).))))(((....))))))))))))))))((.((....)).))......... ( -26.58) >DroSec_CAF1 124870 116 + 1 UUGUGAGUUUGUGCAUCUGAUAGGAGCUCACAAAAAA-CAAACCA--UAAAAACAAUAAAACAUGGCUAUAUCGCCGAAAGGUUGCAGAACUCACAGGGUGCAAACAGCCAGGAUAACA .(((((((((.((((...((((..((((.........-.......--.................)))).))))(((....))))))))))))))))((.((....)).))......... ( -29.41) >DroEre_CAF1 127687 105 + 1 UUGUGCGUUUGUGCAUCUGAUAAGAGCUGACAAAAAA-UAAACCA--UAAAAAGAGUAAAACAUGACAAUAUCGCCGAAAGGUUGCAGGACUCACAGG-----------CAGGAUAACA ((.((((((...((.(((....))))).)))......-.......--......((((....(.((.((.....(((....)))))))).))))....)-----------)).))..... ( -19.20) >DroYak_CAF1 130009 118 + 1 UUGUGAGCUGGUGCAUCUGAUAAGAGCUGACAAAAAA-UAAAUAAUAUAAAACCAAUAAAACAUGACUAUAUCGCCGAAAGGUUGAAGCACUCACAGGGUGCAAACAGCCGGGAUAACA ((((.((((..(((....).))..)))).))))....-...............................((((.((....(((((..(((((.....)))))...)))))))))))... ( -25.20) >consensus UUGUGAGUUUGUGCAUCUGAUAAGAGCUCACAAAAAA_UAAACCA__UAAAAACAAUAAAACAUGACUAUAUCGCCGAAAGGUUGCAGGACUCACAGGGUGCAAACAGCCAGGAUAACA .((((((.((.(((((((....)))................................................(((....))))))).))))))))((.((....)).))......... (-19.83 = -19.95 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:22 2006