| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,500,584 – 20,500,687 |
| Length | 103 |
| Max. P | 0.500000 |
| Location | 20,500,584 – 20,500,687 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.12 |
| Mean single sequence MFE | -28.80 |
| Consensus MFE | -15.91 |
| Energy contribution | -17.78 |
| Covariance contribution | 1.87 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.55 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20500584 103 + 22407834 AUAUUUAAGUGGUGUGG---UGGCGAUG-CACAC-----------GGUCUACAGAAUCGCAAUGAAAGGACAAAGUUGCCAACGGAAACGGAAGCAACUACACAGAGUCGCUC--AUACC ..........(((((((---((((..((-.....-----------.((((.................))))..((((((...((....))...))))))...))..))))).)--))))) ( -30.33) >DroPse_CAF1 56668 114 + 1 AUAUUUAAGCCGAGUGGGCAUCGCAUCG-CACAGCUCUCCCUCCCUCCCUCCA-----GCAAUGAAAGGACAAAGUUGCCAACGGAAACGGAAGCAACUACACAGAGUCCUUCCCAUUCU ...........(((((((....((...)-)...(((((.......(((...((-----....))...)))...((((((...((....))...))))))....)))))....))))))). ( -29.90) >DroSec_CAF1 17625 100 + 1 AUAUUUAAGUGGGGUGG---UGGCGAUG-CACAC-----------GGUCUACAGAAUCGCAAUGAAAGGACAAAGUUGCCAACGGAAACGGAA---ACUACACAGAGUCGCUC--AUACC ........(((((((((---(((((((.-.....-----------.((((.................))))...))))))).((....))...---...........))))))--.))). ( -21.73) >DroEre_CAF1 16755 103 + 1 AUAUUUAAGUGGAGUGG---UGGCGAUG-CACAC-----------GGUCCACAGAAUCGCAAUGAAAGGACAAAGUUGCCAACGGAAACGGAAGCAACUACACAGAGUCGCUC--AUUCC ..........(((((((---((((..((-.....-----------.((((.................))))..((((((...((....))...))))))...))..))))).)--))))) ( -32.33) >DroYak_CAF1 16705 103 + 1 AUAUUUAAGUGGAGUGG---UGGCGAUG-CACAC-----------GGUCUGCAGAAUUGCAUUGAAAGGACAAAGUUGCCAACGGAAACGGAAGCAACUACACAGAGUCGCUC--AUUCC ..........(((((((---((((..((-.....-----------.((((.(((.......)))...))))..((((((...((....))...))))))...))..))))).)--))))) ( -32.10) >DroAna_CAF1 9389 104 + 1 AUAUAUACGUAGAAUCG---AGAGAAAGCCACCU-----------CGUCCUCGGCUGUAAAAUGAAAGGACAAAGUUGCCAACGGAAACGGAAGCAACUACACAGAGUCGCUC--AUUCC ...........((((.(---((.((.......((-----------((((((...(........)..)))))..((((((...((....))...)))))).....))))).)))--)))). ( -26.41) >consensus AUAUUUAAGUGGAGUGG___UGGCGAUG_CACAC___________GGUCUACAGAAUCGCAAUGAAAGGACAAAGUUGCCAACGGAAACGGAAGCAACUACACAGAGUCGCUC__AUUCC ..........(((((......((((((...................((((.................))))..((((((...((....))...)))))).......))))))...))))) (-15.91 = -17.78 + 1.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:38 2006