Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,500,218 – 20,500,309 |
Length | 91 |
Max. P | 0.924454 |
Location | 20,500,218 – 20,500,309 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 81.54 |
Mean single sequence MFE | -33.10 |
Consensus MFE | -14.47 |
Energy contribution | -18.02 |
Covariance contribution | 3.54 |
Combinations/Pair | 1.07 |
Mean z-score | -2.92 |
Structure conservation index | 0.44 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.619369 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20500218 91 + 22407834 GCAUGGGCCUGGCAUUAGGUAUAAUUUACCUAACCAGCGUCUGGCGCUACUCAGCGCAGGUCACCUGCGCUAAAGUGGUGACCCAAACCGC ((..((((((((..(((((((.....))))))))))).))))(((((((((.((((((((...))))))))..))))))).))......)) ( -41.90) >DroSec_CAF1 17193 91 + 1 GCGUGGGCCUGGCAUUAGGUAUAAUUUACCUAACCAGCGUCUGGCGCUACUCAGCGCAGGUCACCUACGCUAAAGUGGUGACCCAAACCGC (((.((((((((..(((((((.....))))))))))).)))).(((((....))))).(((((((.((......))))))))).....))) ( -40.00) >DroSim_CAF1 22296 91 + 1 GCGUGGGCCUGGCAUUAGGUAUAAUUUACCUAACCAGCGUCUGGCGCUACUCAGCGCAGGUCACCUACGCUAAAGUGGUGACCCAAACCGC (((.((((((((..(((((((.....))))))))))).)))).(((((....))))).(((((((.((......))))))))).....))) ( -40.00) >DroEre_CAF1 16281 91 + 1 GCGUGGGUCUGGCAUUACGUAUAAUUUACCUAACCAGCCUCUGCCGCCUCUCGGCGCAGGUCACCUGCGCUGAAGUGGUGACCCCAACCGC (((.(((((.(((.(((.(((.....))).)))...)))...(((((...((((((((((...)))))))))).))))))))))....))) ( -38.50) >DroYak_CAF1 16387 91 + 1 GCGUGAGUCUAGCAUUAAGUAUAAUUUACCUAACCAGCGUCUGCCGCUUCUCAACGCAGGUAACCUCCGCUAAGGUGGUGACCCAAACCGC (((((((...(((.(((.(((.....))).)))...((....)).))).))).)))).(((.(((.((.....)).))).)))........ ( -24.20) >DroAna_CAF1 9082 70 + 1 GCCUGGUUCUGGCAUUAAAUAUAAUUUACCUAACCAAAGUCUGG-GCCAC--------------------UCAAGUGGAGACUGAAACCGA ...(((((..((.((((....))))...)).))))).(((((..-.((((--------------------....)))))))))........ ( -14.00) >consensus GCGUGGGCCUGGCAUUAGGUAUAAUUUACCUAACCAGCGUCUGGCGCUACUCAGCGCAGGUCACCUACGCUAAAGUGGUGACCCAAACCGC (((((((.((((..(((.(((.....))).)))))))..((((.((((....))))))))...)))))))....(((((.......))))) (-14.47 = -18.02 + 3.54)
Location | 20,500,218 – 20,500,309 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 81.54 |
Mean single sequence MFE | -35.12 |
Consensus MFE | -25.90 |
Energy contribution | -26.78 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.38 |
Mean z-score | -2.73 |
Structure conservation index | 0.74 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.924454 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20500218 91 - 22407834 GCGGUUUGGGUCACCACUUUAGCGCAGGUGACCUGCGCUGAGUAGCGCCAGACGCUGGUUAGGUAAAUUAUACCUAAUGCCAGGCCCAUGC ...((.((((((.....(((((((((((...)))))))))))(((((.....)))))((((((((.....))))))))....)))))).)) ( -39.30) >DroSec_CAF1 17193 91 - 1 GCGGUUUGGGUCACCACUUUAGCGUAGGUGACCUGCGCUGAGUAGCGCCAGACGCUGGUUAGGUAAAUUAUACCUAAUGCCAGGCCCACGC (((((((((((((((((......)).))))))).(((((....)))))))))).(((((((((((.....))))))..))))).....))) ( -40.40) >DroSim_CAF1 22296 91 - 1 GCGGUUUGGGUCACCACUUUAGCGUAGGUGACCUGCGCUGAGUAGCGCCAGACGCUGGUUAGGUAAAUUAUACCUAAUGCCAGGCCCACGC (((((((((((((((((......)).))))))).(((((....)))))))))).(((((((((((.....))))))..))))).....))) ( -40.40) >DroEre_CAF1 16281 91 - 1 GCGGUUGGGGUCACCACUUCAGCGCAGGUGACCUGCGCCGAGAGGCGGCAGAGGCUGGUUAGGUAAAUUAUACGUAAUGCCAGACCCACGC (((....(((((((((((((.(((((((...)))))(((....))).)).)))).))))..((((............)))).))))).))) ( -40.40) >DroYak_CAF1 16387 91 - 1 GCGGUUUGGGUCACCACCUUAGCGGAGGUUACCUGCGUUGAGAAGCGGCAGACGCUGGUUAGGUAAAUUAUACUUAAUGCUAGACUCACGC (((...(((((((((..(((((((.(((...))).))))))).((((.....)))))))((((((.....))))))......))))))))) ( -32.10) >DroAna_CAF1 9082 70 - 1 UCGGUUUCAGUCUCCACUUGA--------------------GUGGC-CCAGACUUUGGUUAGGUAAAUUAUAUUUAAUGCCAGAACCAGGC ..(((((.(((((((((....--------------------)))).-..))))).((((((((((.....))))))..))))))))).... ( -18.10) >consensus GCGGUUUGGGUCACCACUUUAGCGCAGGUGACCUGCGCUGAGUAGCGCCAGACGCUGGUUAGGUAAAUUAUACCUAAUGCCAGACCCACGC (((....(((((.....(((((((((((...))))))))))).((((.....))))(((((((((.....))))))..))).))))).))) (-25.90 = -26.78 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:37 2006