Locus 7353

Sequence ID 2L_DroMel_CAF1
Location 20,494,494 – 20,494,609
Length 115
Max. P 0.713186
window11804

overview

Window 4

Location 20,494,494 – 20,494,609
Length 115
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 94.96
Mean single sequence MFE -28.07
Consensus MFE -25.90
Energy contribution -25.79
Covariance contribution -0.11
Combinations/Pair 1.07
Mean z-score -1.85
Structure conservation index 0.92
SVM decision value 0.38
SVM RNA-class probability 0.713186
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20494494 115 + 22407834
AUCUUGAAGCCUGCGGCUGAUUUGGAUGGGACGCAGAACAAAAGCAAUAGACAAAAUGAAACACUUUUACGUUUUAAUGGUCUAGAGAUAU----GUUUAUGCAAAACAUAAGCGGAAA
(((((.....(((((.((.((....)).)).)))))...........(((((....((((((........))))))...)))))))))).(----(((((((.....)))))))).... ( -27.00)
>DroSec_CAF1 11568 119 + 1
AUCUUGAAGCCUGCGGCUGAUUUGGAUGGAACGCAGAACAAAAGCAAUAGACCGAAUGAAACACUUUUACGUUUUAAUGGUCUAGAGAUAUGUAUGUUUAUGCAAAACAUAAGCGGAAA
(((((.....(((((..(.((....)).)..)))))...........(((((((..((((((........)))))).)))))))))))).....((((((((.....)))))))).... ( -28.40)
>DroSim_CAF1 16635 119 + 1
AUCUUGAAGCCUGCGGCAGAUUUGGAUGGAACGCAGAACAAAAGCAAUAGACCAAAUGAAACACUUUUACGUUUUAAUGGUCUAGAGAUAUGUAUGUUUAUGCAAAACAUGAGCGGAAA
(((((.....(((((.((........))...)))))...........(((((((..((((((........)))))).)))))))))))).....((((((((.....)))))))).... ( -28.80)
>consensus
AUCUUGAAGCCUGCGGCUGAUUUGGAUGGAACGCAGAACAAAAGCAAUAGACCAAAUGAAACACUUUUACGUUUUAAUGGUCUAGAGAUAUGUAUGUUUAUGCAAAACAUAAGCGGAAA
(((((.....(((((................)))))...........(((((((..((((((........)))))).))))))))))))......(((((((.....)))))))..... (-25.90 = -25.79 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:33 2006