Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,494,101 – 20,494,220 |
Length | 119 |
Max. P | 0.908905 |
Location | 20,494,101 – 20,494,220 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 75.06 |
Mean single sequence MFE | -34.78 |
Consensus MFE | -19.22 |
Energy contribution | -20.50 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.17 |
Mean z-score | -1.98 |
Structure conservation index | 0.55 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.908905 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20494101 119 + 22407834 GUAGAUUUUCCCGCGGCUAAAGUCAAUAGAAAACAAUGCGUUUUCAUUUGGGAACCGGUAGCGCGGUCAAAGCAUUUUUCCGGUGAAGGAAAAUAGCUCCUCGCUAUUCUAUCACAUCU (((((..(((((..(((....)))....((((((.....))))))....)))))...((((((.((....(((..((((((......))))))..))))).)))))))))))....... ( -35.50) >DroSec_CAF1 11177 119 + 1 GUGGAUUUCCCCACGGCUAAAGUCAACAGAAAACAAAGCGUUUUCAUUUGGGAACCGGUAGCGCGGUCAAAGCAUUUUUCCGGUAAAGGAAAAUAGCUCCUCGCUAUUCUAUCCCGUCU ((((......))))(((...........((((((.....))))))....((((...(((((((.((....(((..((((((......))))))..))))).)))))))...))))))). ( -39.30) >DroSim_CAF1 16244 119 + 1 GUGGAUUUCCCCACGGCUAAAGUCAACAGAAAACAAAGCGUUUUCAUUUGGGAACCGGUAGCGCGGUCAAAGCAUUUUUCCGGUAAAGGAAAAUAGCUCCUCGCUAUUCUAUCCCGUCU ((((......))))(((...........((((((.....))))))....((((...(((((((.((....(((..((((((......))))))..))))).)))))))...))))))). ( -39.30) >DroEre_CAF1 10349 95 + 1 GUG--UUU---------UGCAGC-------------AGCUGGUUCAUUUGGGAAGCGGUGGCGCGGUCAAAGCGUUUUUCCGGUGAAGGAAAAUAGCUGCUCGCUUCGCUAUUCCAUCC (((--...---------.(((((-------------(((((.(((((..(..(((((.((((...))))...)))))..)..)))))......)))))))).))..))).......... ( -30.90) >DroYak_CAF1 10343 98 + 1 GC---------------UGGAGUCGACACAAGAGAAUGCGUAUUCAUUUGGGAGCCGGAAGCGCGGUCAAAGCAUUUUUCCGGUGCAGGAAAAUAGCUGCCCG-----CUAUUCCAUU- ..---------------((((((.(......(((((((((....).(((((..(((....).))..))))))))))))).(((.((((........)))))))-----).))))))..- ( -28.90) >consensus GUGGAUUU_CCC_CGGCUAAAGUCAACAGAAAACAAAGCGUUUUCAUUUGGGAACCGGUAGCGCGGUCAAAGCAUUUUUCCGGUGAAGGAAAAUAGCUCCUCGCUAUUCUAUCCCAUCU ................................................(((((...(((((((.((....(((..((((((......))))))..))))).)))))))...)))))... (-19.22 = -20.50 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:32 2006