Locus 7348

Sequence ID 2L_DroMel_CAF1
Location 20,487,928 – 20,488,028
Length 100
Max. P 0.708298
window11791

overview

Window 1

Location 20,487,928 – 20,488,028
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 84.85
Mean single sequence MFE -25.37
Consensus MFE -23.21
Energy contribution -22.67
Covariance contribution -0.55
Combinations/Pair 1.20
Mean z-score -1.21
Structure conservation index 0.92
SVM decision value 0.37
SVM RNA-class probability 0.708298
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20487928 100 + 22407834
AGCGAGUCCGUGCAAAUAUUCUUGGCCAAAACCGCACCAUUGUGCGGUCAUUUUUAUGGCACUUUUAUGACCGUCGGCUGGGAAAUAAAAAUAUAAAGAA
.(((......))).....((((..(((...(((((((....))))))).......((((((......)).)))).)))..))))................ ( -28.20)
>DroSec_CAF1 5003 91 + 1
AGCGAGUCCGGGCAAAUCUUCUUGGCUAAAACCGCACCAUUGUGCGGGCAUUUUUAUGGCACUUUUAUGACCGCUGGCUGGGAAAUAA---------AAA
.((........)).....((((..((((...((((((....))))))..........((((......)).))..))))..))))....---------... ( -24.70)
>DroEre_CAF1 4678 97 + 1
AGCGAGUUCCGGCAAAUCUUCUUGGCUAAAACCGCAGCAGAGUGCGGGCAUUUUUAUGGCACUUUUAUGACCGCCGGCUAGGAAAUAAAAAUAA---AAA
.((........)).....(((((((((....(((((......)))))..........(((............))))))))))))..........---... ( -23.20)
>consensus
AGCGAGUCCGGGCAAAUCUUCUUGGCUAAAACCGCACCAUUGUGCGGGCAUUUUUAUGGCACUUUUAUGACCGCCGGCUGGGAAAUAAAAAUA____AAA
.((........)).....(((((((((....((((((....))))))..........(((............))))))))))))................ (-23.21 = -22.67 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:22 2006