Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,487,333 – 20,487,447 |
Length | 114 |
Max. P | 0.549343 |
Location | 20,487,333 – 20,487,447 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 70.67 |
Mean single sequence MFE | -24.93 |
Consensus MFE | -12.19 |
Energy contribution | -13.62 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.17 |
Mean z-score | -1.78 |
Structure conservation index | 0.49 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.549343 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20487333 114 - 22407834 GUCAGGCGGACUGGGAAAACCACUAAUAUCUUUUGAAAUAGUGUUAUUUAAAAUACUGCGAAAGCAGGUGGUUU-AGGCAACUCUAUUAAAGUUGAUGUUAUAAAAAUGUCAUGC .....(((((((((.....))).(((((((..((..(((((.(((.((((((...((((....))))....)))-))).))).)))))..))..))))))).......))).))) ( -31.00) >DroSec_CAF1 4387 110 - 1 GUCACGUGGACUGGGAAAACCACUAAUACCAUUUGAAAUAGUGUUACUUAAAACACUUCGGAAGCAGGUGGUUU-A----ACUCUAUUAAGGUGGACAUUUUAAAAAUGCCUUGC (((.....)))(((.....)))......((((((..(((((.((((.......((((((....).)))))...)-)----)).))))).)))))).................... ( -22.10) >DroSim_CAF1 9706 109 - 1 -UCACGUGGACUGGGAAAACCACUAAUACCAUUUGAAAUAGUGUUACUUAAAACACUGCGGAAGCAGGUGGUUU-A----ACUCCAUUAAAGUGGACGUUAUAAAAAGGACAUGC -...((((..((....((((((((...............((((((......))))))((....)).))))))))-(----(((((((....))))).)))......))..)))). ( -32.20) >DroYak_CAF1 3657 90 - 1 -------------------------AAACCAUUUACAAUAUGGUAAUAUAAAAUAAAGCGGAAUUAAGUGGUUUUAGGUGACUCUAUUAAAGUGGACAUUAUAAGUAGGCAACGC -------------------------...((((((..((((.(((....((((((...((........)).))))))....))).)))).))))))............(....).. ( -14.40) >consensus _UCACGUGGACUGGGAAAACCACUAAUACCAUUUGAAAUAGUGUUACUUAAAACACUGCGGAAGCAGGUGGUUU_A____ACUCUAUUAAAGUGGACAUUAUAAAAAGGCCAUGC ...........(((.....)))......((((((..(((((.((......((((.((((....))))...))))......)).))))).)))))).................... (-12.19 = -13.62 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:19 2006