Locus 7345

Sequence ID 2L_DroMel_CAF1
Location 20,487,180 – 20,487,281
Length 101
Max. P 0.940944
window11787

overview

Window 7

Location 20,487,180 – 20,487,281
Length 101
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 83.83
Mean single sequence MFE -31.43
Consensus MFE -23.40
Energy contribution -23.15
Covariance contribution -0.25
Combinations/Pair 1.22
Mean z-score -2.27
Structure conservation index 0.74
SVM decision value 1.31
SVM RNA-class probability 0.940944
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20487180 101 + 22407834
GCACUUAAAGUCGCCUUAGCGACUCACUUGGGCUACAUUGCCUGCACGAAAGUGUUUC-AAAAGAUUCGGAUUUUUAUUCCGAGCGAGCUUAGAUUGAGCUC
((......((((((....))))))..(((((((......))))((((....))))...-..)))..(((((.......)))))))((((((.....)))))) ( -35.00)
>DroSec_CAF1 4232 101 + 1
GCACUUAAAGUCGCCUUAGCGACUCACUUGGGCUACAUUGGCUGCACGAAAGUGUCUC-GAAAGAUUAUGAUUAUUAUUCCGAGUGAGCUUAGAUCGCGCUC
((.......(((((....)))))(((((((((((.....))).((((....)))).((-....))..............)))))))).........)).... ( -31.30)
>DroSim_CAF1 9559 95 + 1
GCACUUAAAGUCGCCUUAGCGACUCACUUGGGCUACAUUGCCUGCACGAAAGUGUUUC-GAAAGAU------UAUUGUUCCGAGUGAGCUUAGAUCGAGCUC
.........(((((....)))))((((((((((......))).((((....)))).((-....)).------........)))))))((((.....)))).. ( -31.60)
>DroYak_CAF1 3491 99 + 1
GCACUUAAAGUCGCCUUAGUGAGCCACUUGGGCUACAUUGCCUGCACAGAAGUGUUUCUUCGAGAUU---AUUAUUAUUGCGAGUGGUCUUAAGUAAGGGUC
.............(((((.((((((((((((((......)))......((((.....))))......---..........))))))).))))..)))))... ( -27.80)
>consensus
GCACUUAAAGUCGCCUUAGCGACUCACUUGGGCUACAUUGCCUGCACGAAAGUGUUUC_GAAAGAUU___AUUAUUAUUCCGAGUGAGCUUAGAUCGAGCUC
.........(((((....)))))((((((((((......))).((((....)))).........................)))))))((((.....)))).. (-23.40 = -23.15 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:18 2006